View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9301_low_9 (Length: 430)
Name: NF9301_low_9
Description: NF9301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9301_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 175 - 416
Target Start/End: Complemental strand, 2836654 - 2836409
Alignment:
| Q |
175 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaacccccattttaagtcttttagcaatgaat----tctacaattacaaag |
270 |
Q |
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| T |
2836654 |
tttaaaaatgaaaaggccacaatttcacacaagaatccctcaagataccgaatccccattttaagtcttttagcaatgaatgaattctacaattacaaag |
2836555 |
T |
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| Q |
271 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttaccttgcacaatctacatg |
370 |
Q |
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| T |
2836554 |
tatttgagctcagattttgtgtagacgaatcaccttttgatctatgaaactgttcaatcatatggacgaaaatagttgcttaccttgcacaatctacatg |
2836455 |
T |
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| Q |
371 |
gtttgtacacattagaactagccttgtttaataccataaaaaatct |
416 |
Q |
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| T |
2836454 |
gtttgtacacattagaactagccttgtttaataccataaaaaatct |
2836409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 12 - 179
Target Start/End: Complemental strand, 2836908 - 2836741
Alignment:
| Q |
12 |
agagaaaaacgaaaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaa |
111 |
Q |
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| T |
2836908 |
agagaaaaacgaaaactgagaaaaataaacaatactagtactcatgaaaagtgaaaacagaggagagagataaggatttggaagaaaaaggtaacaaaaa |
2836809 |
T |
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| Q |
112 |
ttgaacaaatatccgatgattcttgcacatcaggagagaatgagttcttttatgtgaaattcttttaa |
179 |
Q |
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| T |
2836808 |
ttgaacatatatccgatgattcttgcacatcaagagagaatgagttcttttaagtgaaattcttttaa |
2836741 |
T |
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