View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_high_11 (Length: 248)
Name: NF9302_high_11
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 238
Target Start/End: Original strand, 39142590 - 39142804
Alignment:
| Q |
24 |
gctccagggttttgacacgtggaccaccacatgattgccatgtcattcttactacgaggatcgttctcacaccccaactcaaacctcgtattgttatagt |
123 |
Q |
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| T |
39142590 |
gctccagggttttgacacgtggaccaccagatgattgccatgtcattcttactatggggatcgttctcacaccccaactcaaacctcgtattgttattgt |
39142689 |
T |
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| Q |
124 |
caaaaatactggtcattcccgtatctgtgtcactgtgtttgaccaatttttcttcgacaaaacttcccggaccccaattttcttggatttggagggtaaa |
223 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39142690 |
caaaaataccggtcattcccgtatctgtgtgactgtgtttgaccaaattttcttcgacaaaacttcccggaccccaattttcttggatttggagggtaaa |
39142789 |
T |
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| Q |
224 |
tatttctctgctcct |
238 |
Q |
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|||||| ||| |||| |
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| T |
39142790 |
tatttcactggtcct |
39142804 |
T |
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