View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_high_3 (Length: 355)
Name: NF9302_high_3
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 275311 - 275120
Alignment:
| Q |
18 |
tataactcatttagagtcggtaaaatcagcatcaatcacatccccatctgctcccttgcctgatgatgattctgaggggccagactcgctaccaggtggt |
117 |
Q |
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| T |
275311 |
tataactcatttagagtcagtaaaatcagcatcaatcacatctccatctgctcccttgcctgatgatgagtctgtggggccagactcgctaccaggtggt |
275212 |
T |
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| Q |
118 |
gtaggtcctgctgcatctgcatctccaggttggttatacagagactgtccaagccgcataacttcctgattgagggcagccatggcatcttt |
209 |
Q |
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| T |
275211 |
gtaggtcctgctgcatctgcagctccgggttggttatatagagactgtccaagctgcataacttcctgattgagggcagccatggcatcttt |
275120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 202 - 355
Target Start/End: Complemental strand, 275091 - 274938
Alignment:
| Q |
202 |
gcatctttaagctctaccagctttgcttccaccttctctttcacagagtcgtgtacattttctcctagctctttcaattgcttctcagtctggtagacaa |
301 |
Q |
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| T |
275091 |
gcatctttaagctctaccaactttgcttcaaccttttctttcacagggccaggtaccttttctcctagctctttcaattgcttttcagtctggtagacaa |
274992 |
T |
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| Q |
302 |
cagagtccgcctggttctttgtgtctattgcatccctcttctctttgtcctcct |
355 |
Q |
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| T |
274991 |
cagagtccgcctgattctttgtgtctattgcatccctcttctccttgtcctcct |
274938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 43617386 - 43617531
Alignment:
| Q |
18 |
tataactcatttagagtcggtaaaatcagcatcaatcacatccccatctgctcccttgcctgatgatga-------ttctgaggggccagactcgct-ac |
109 |
Q |
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| T |
43617386 |
tataactcatttagagtcagtaaaatcagcatcaatcacatccccatctgctcccttgcctgatgatgattctgacttctgaggggccagactcgctaac |
43617485 |
T |
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| Q |
110 |
caggtggtgtaggtcctgctgcatctgcatctccaggttggttata |
155 |
Q |
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| T |
43617486 |
caggtggtgtaggtcctgctgcatctgcagctccaggttggttata |
43617531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 43618455 - 43618509
Alignment:
| Q |
157 |
agagactgtccaagccgcataacttcctgattgagggcagccatggcatctttaa |
211 |
Q |
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| T |
43618455 |
agagactgtccaagctgcataacttcctgattgagggcagccatggcatctttaa |
43618509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 43618536 - 43618581
Alignment:
| Q |
202 |
gcatctttaagctctaccagctttgcttccaccttctctttcacag |
247 |
Q |
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| T |
43618536 |
gcatctttaagctcttccagctttgcttccaccttctctttcacag |
43618581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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