View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_high_7 (Length: 267)
Name: NF9302_high_7
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 29879011 - 29879230
Alignment:
| Q |
18 |
atctgccacattggtttacttcaccaacaaaattgtcttcataaatttctctcattgaaatttaactaacacgttcactatacatgcatgcatgatgcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29879011 |
atctgccacattggtttacttcaccaacaaaattgtcttcataaatttctctcattgaaatttaactaacacgttcactatacatgcatgcatgatgcat |
29879110 |
T |
|
| Q |
118 |
gctatacttctcccagttctgaatcatgcttgtgcacatagattatattttagttaattacaactaattttcaccttcaatatataggtgcttctttttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29879111 |
gctatacttctcccagttctgaatcatgcttgtgcacatagattatattttagttaattacaactaattttcac-----------aggtgcttctttttc |
29879199 |
T |
|
| Q |
218 |
aactaattataactatatacactaatttctc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29879200 |
aactaattataactatatacactaatttctc |
29879230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University