View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_1 (Length: 722)
Name: NF9302_low_1
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 11 - 705
Target Start/End: Original strand, 38080905 - 38081617
Alignment:
| Q |
11 |
aagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatggttc |
110 |
Q |
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| T |
38080905 |
aagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaagtgaagtaatgtttc |
38081004 |
T |
|
| Q |
111 |
ggttatatatataggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccatataggctcctttatttgttgttatattttgatat |
210 |
Q |
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| T |
38081005 |
ggttatata----ggaggaatttgggataactcagttcttatgtgcgtgcctaaaacttatcccat----gctcctttatttgttgttatattttgatat |
38081096 |
T |
|
| Q |
211 |
gttggttagcatatgtacctaccaacatttgattgtgtcttttctcctgccggcttattttagagcattgagcaggccatgatcttaaacatgtgaaata |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38081097 |
gttggttagcatatgtacctaccaacatttgattgtgtcttttctcctgccggcttattttagagcattgagcaggccatgatcttaaacatgtgaaata |
38081196 |
T |
|
| Q |
311 |
atattcactcgt------------ttgtgtttaattccatat----agttttggttttctgtatttgtaattcgcacaacatctctaatggattgtttat |
394 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38081197 |
atattcactcgtgtcttaagtattttgtgtttaattccatatatatagttttggttttctgtatttgtaattcgcacaacatctctaatggattgtgtat |
38081296 |
T |
|
| Q |
395 |
aacttcaaataacattgaaaatcagaaattagattattaatatagaaatgatgtgcctgtcgggaaaaacaatcccacaaacgtatcacaagtaacatga |
494 |
Q |
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| T |
38081297 |
aacttcaaataacattgaaaatcagaaattagattattaatatagaaatgatgtgcctgtcgggaaaaacaatcccacaaacgtatcacaagtaacatga |
38081396 |
T |
|
| Q |
495 |
caagtttaaagtcagtcctata---tattaattcaagtttagccagaactccttattggtcatttttctgttcacatgaaaaattgcatttatcttactt |
591 |
Q |
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| T |
38081397 |
caagtttaaagtcagtcctatatattattaattcaagtttagccagaactccttattggtcatttttctgttcacaggaaaaattgcatttatcttactt |
38081496 |
T |
|
| Q |
592 |
atatattctaataatgatcgcgagccttgttcacaaagctaatgacttattgaatttacctttaagaataacatgatgg-------ctattgctgcttaa |
684 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38081497 |
atatattctaataatgatcgcgagccttgttcacaaagctaatgacttgttgaatttacctttaagaataccatgatggctattgcctattgctgcttaa |
38081596 |
T |
|
| Q |
685 |
tatgagcaattctattctaag |
705 |
Q |
| |
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| T |
38081597 |
tatgagcaattctattctaag |
38081617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 39701073 - 39701145
Alignment:
| Q |
23 |
atgctggaaaacattctgagagcttgtgttggattggctcctgagaacaacatgatccttgaatacaagtgaa |
95 |
Q |
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||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||| |
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| T |
39701073 |
atgcttgaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctcgagtacaagtgaa |
39701145 |
T |
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