View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_low_10 (Length: 439)
Name: NF9302_low_10
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_10 |
 | |
|
| [»] scaffold0103 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 2568505 - 2568077
Alignment:
| Q |
1 |
tcgataatgtacttgttgtgataacaggtgaaattgaaaataaaattgaggaggtttagggaaattggttgtcccttagcttgtaaaaaatttcatttgt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2568505 |
tcgatgatgtacttgttgtgataacaggtgaaattgaaaataaaattgaggaggtttacggaaattggttgtcccttagcttctaaaaaatttcatttgt |
2568406 |
T |
|
| Q |
101 |
acaatcatcaaaattgttggtttttcaaacgtaagacaattcctatgttaattactatatagttattttgtattgctctcaatatcatatatgattaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568405 |
acaatcatcaaaattgttggtttttcaaacataagacaattcctatgttaattactatatagttattttgtattgctctcaatatcatatatgattaaaa |
2568306 |
T |
|
| Q |
201 |
tcttggctcccaccttgagaataatgggagttagggagatgacacttactgtaatcttgttttacctcttattgaagtagtctaattccacctcttattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568305 |
tcttggctcccaccttgagaataatgggagttagggagatgacacttactgtaatcttgttttacctcttattgaagtagtctaattccacctcttattt |
2568206 |
T |
|
| Q |
301 |
gagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggatgtagaacaacttgaagtagaatatttcctaaca |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568205 |
gagaattgtattaatattgttaatgtcgattttgattaaatgcatatgcacttgtttaccaatggatgtagaacaacttgaagtagaatatttcctaaca |
2568106 |
T |
|
| Q |
401 |
acttagtgtaaaactttcttcctcctatg |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2568105 |
acttagtgtaaaactttcttcctcctatg |
2568077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 429
Target Start/End: Original strand, 2635029 - 2635188
Alignment:
| Q |
268 |
cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggat |
367 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||| | |||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||||| || ||| |
|
|
| T |
2635029 |
cttattgaagtagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat |
2635128 |
T |
|
| Q |
368 |
gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg |
429 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
2635129 |
gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatg |
2635188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 268 - 429
Target Start/End: Original strand, 2593055 - 2593215
Alignment:
| Q |
268 |
cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggat |
367 |
Q |
| |
|
|||||||||||||||| || ||||||||||| | |||||||||||||||||||| ||| ||||||||| |||||||||| ||||| || || | ||| |
|
|
| T |
2593055 |
cttattgaagtagtcttgtttaacctcttatttaaaaattgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattccctagcgat |
2593154 |
T |
|
| Q |
368 |
gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg |
429 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
2593155 |
gtagaa-aacttgaagtagaacatttcctaacaacttgatgtaaaaatttcttactcctatg |
2593215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 155
Target Start/End: Complemental strand, 2671846 - 2671720
Alignment:
| Q |
32 |
aattgaaaataaaattgag--gaggtttagggaaattggttg-tcccttagcttgtaaaaaatttcatttgtacaatcatcaaaattgttggtttttcaa |
128 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||| |||| ||| ||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2671846 |
aattgaaaagaaaattgagaagaggtttaaggagattgtttgctcctttagcttccaaaagttttcatctgtacaatcatcaaaattgttggtttttcaa |
2671747 |
T |
|
| Q |
129 |
acgtaagacaattcctatgttaattac |
155 |
Q |
| |
|
|| || |||||||||||||||||||| |
|
|
| T |
2671746 |
acatagcacaattcctatgttaattac |
2671720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 2624311 - 2624444
Alignment:
| Q |
27 |
ggtgaaattgaaaataaaattgaggag--gtttagggaaattggttgtcccttagcttgtaaaaaatttcatttgtacaatcatcaaaattgttggtttt |
124 |
Q |
| |
|
|||||||||||||| ||||||||| || ||| || |||||||||| ||||||||| ||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
2624311 |
ggtgaaattgaaaagaaaattgagaagaagttcagagaaattggtttcaccttagcttccaaaaaat--catttctacaatcatcaaaattgtaggtttt |
2624408 |
T |
|
| Q |
125 |
tcaaacgtaagacaattcctatgttaattactatat |
160 |
Q |
| |
|
|| ||| ||| |||||| |||| |||||||||||| |
|
|
| T |
2624409 |
tctaacataacacaatttatatgctaattactatat |
2624444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 2671668 - 2671597
Alignment:
| Q |
177 |
tctcaatatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
248 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
2671668 |
tctctatatcatatatggttaaaattgtggctcctaccttgaaaataaggggagttagggagatgacactta |
2671597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 2592796 - 2592940
Alignment:
| Q |
30 |
gaaattgaaaataaaattgag--gaggtttagggaaattggttgtcccttagcttgtaaaaaatttcatttgtacaatcatcaaaattgttggtttttca |
127 |
Q |
| |
|
||||||||||| |||| |||| |||||| | ||||||||||| |||||||| |||| |||||||| || ||||||||||||||| ||||| || |
|
|
| T |
2592796 |
gaaattgaaaagaaaactgagaagaggttcaaggaaattggtttcaacttagcttcctaaaattttcatttctataatcatcaaaattgtaggtttgtct |
2592895 |
T |
|
| Q |
128 |
aacgtaagacaattcctatgttaattactatatagttattttgta |
172 |
Q |
| |
|
||| ||| |||||||||||| |||| ||||||| ||||| ||||| |
|
|
| T |
2592896 |
aacataacacaattcctatgataataactatatggttatattgta |
2592940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 2640660 - 2640599
Alignment:
| Q |
189 |
atatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacacttact |
250 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
2640660 |
atatgattaaaatcttggcttccagcttgaaaataaggggagttagggagatgatacttact |
2640599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 2634966 - 2635032
Alignment:
| Q |
182 |
atatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
248 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
2634966 |
atatcatatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacactta |
2635032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 416
Target Start/End: Complemental strand, 2562104 - 2562052
Alignment:
| Q |
364 |
ggatgtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactt |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | |||| |||||||||| |
|
|
| T |
2562104 |
ggatgtagaacaacttgtagtagaatatttcctaatatcttaatgtaaaactt |
2562052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 2592998 - 2593086
Alignment:
| Q |
188 |
tatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacacttact---gtaatcttgttttacctcttatt |
273 |
Q |
| |
|
||||||| ||||| | |||||||||||| || ||||| |||||||||||||||||||||| | ||| |||||||| |||||||||| |
|
|
| T |
2592998 |
tatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtttaacctcttatt |
2593086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 2451744 - 2451799
Alignment:
| Q |
193 |
gattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
248 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||| |||| || ||||||| |
|
|
| T |
2451744 |
gattaaaatattggctcccaccttgaaaataaagggagtttgggaaatcacactta |
2451799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Complemental strand, 2671561 - 2671518
Alignment:
| Q |
378 |
ttgaagtagaatatttcctaacaacttagtgtaaaactttcttc |
421 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
2671561 |
ttgaagtaaaatatttcctaacaatttaatgtaaaactttcttc |
2671518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 268 - 429
Target Start/End: Complemental strand, 4980 - 4821
Alignment:
| Q |
268 |
cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaacgtcgattttgattaaatgcatatgcacttgtttaccaatggat |
367 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||| | |||||||||||||||||| ||| ||||||||| |||||||||| ||||| ||||| || ||| |
|
|
| T |
4980 |
cttattgaagtagtcttgttcaacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat |
4881 |
T |
|
| Q |
368 |
gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg |
429 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
4880 |
gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatttcttcctcctatg |
4821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 5043 - 4977
Alignment:
| Q |
182 |
atatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
248 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
5043 |
atatcatatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacactta |
4977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University