View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_low_12 (Length: 381)
Name: NF9302_low_12
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 31129769 - 31130145
Alignment:
| Q |
1 |
tgatatcttattctcaaatagaacaattcctcaagccgtcgcggttctcgatcacgactattttagcttaccctttatgccagtttgtgatctttggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31129769 |
tgatatcttattctcaaatagaacaattcctcaagccgtcgcggttctcgatcacgactattttagcttaccctttatgccagtttgtgatctttggaga |
31129868 |
T |
|
| Q |
101 |
gacctaagaaaaatatgcaaaaaccaattattttctagccaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttaagtgata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31129869 |
gacctaagaaaaatatgcaaaaaccaattgttttctagccaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttaagtgata |
31129968 |
T |
|
| Q |
201 |
tagaaaaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31129969 |
tagaaaaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
31130068 |
T |
|
| Q |
301 |
tgttaactctgcaggtgaaactgatgaatataaagggatagttgaaaatcttgtgagggcaataggaactccaaact |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
31130069 |
tgttaactctgcaggtgaaactgatgaatataaaggtatagttgaaaaccttgtgagggcaataggaactccaaact |
31130145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 31137423 - 31137047
Alignment:
| Q |
1 |
tgatatcttattctcaaatagaacaattcctcaagccgtcgcggttctcgatcacgactattttagcttaccctttatgccagtttgtgatctttggaga |
100 |
Q |
| |
|
|||| ||||| ||||||| |||||| | |||||||| || | ||| || |||| || |||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
31137423 |
tgatctcttactctcaaacagaacagtccctcaagctgttacagttttcaatcatgatcattttagcttaccctttatgccggtttgcgatctttggaga |
31137324 |
T |
|
| Q |
101 |
gacctaagaaaaatatgcaaaaaccaattattttctagccaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttaagtgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31137323 |
gacctaagaaaaatatgcaaaaaccatttgttttctagcaaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttatgtgata |
31137224 |
T |
|
| Q |
201 |
tagaaaaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
300 |
Q |
| |
|
| || | ||| | ||||||||| |||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||| | ||||| ||||||||||| |
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|
| T |
31137223 |
ttgatagaagtaacttaattggggaagctgttgatgttggaaaagctgtttttaaaacttcattgaattttttgtcaaacgcatttttttctatggattt |
31137124 |
T |
|
| Q |
301 |
tgttaactctgcaggtgaaactgatgaatataaagggatagttgaaaatcttgtgagggcaataggaactccaaact |
377 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31137123 |
tgttaactctgcaggagaaactgatgaatataaaggtataattgaaaatcttgtgagagcaataggaacaccaaact |
31137047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 31151616 - 31151992
Alignment:
| Q |
1 |
tgatatcttattctcaaatagaacaattcctcaagccgtcgcggttctcgatcacgactattttagcttaccctttatgccagtttgtgatctttggaga |
100 |
Q |
| |
|
|||| ||||| ||||||| |||||| | |||||||| || | ||| || |||| || ||||||||||||| |||||||| ||||| |||||||||||| |
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|
| T |
31151616 |
tgatctcttactctcaaacagaacagtccctcaagctgttacagttttcaatcatgatcattttagcttaccgtttatgccggtttgcgatctttggaga |
31151715 |
T |
|
| Q |
101 |
gacctaagaaaaatatgcaaaaaccaattattttctagccaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttaagtgata |
200 |
Q |
| |
|
||| || ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31151716 |
gacttacgaaaaatatgcaaaaaccatttgttttctagcaaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttatgtgata |
31151815 |
T |
|
| Q |
201 |
tagaaaaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
300 |
Q |
| |
|
| || | ||| | ||||||||| |||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
31151816 |
ttgatagaagtaacttaattggggaagctgttgatgttggaaaagctgtttttaaaacttcattgaattttttgtcaaacgcatttttttctatggattt |
31151915 |
T |
|
| Q |
301 |
tgttaactctgcaggtgaaactgatgaatataaagggatagttgaaaatcttgtgagggcaataggaactccaaact |
377 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
31151916 |
tgttaactctgcaggagaaactgatgaatataaaggtataattgaaaatcttgtgagagcaataggaacaccaaact |
31151992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 24485295 - 24484921
Alignment:
| Q |
1 |
tgatatcttattctcaaatagaacaattcctcaagccgtcgcggttctcgatcacgactattttagcttaccctttatgccagtttgtgatctttggaga |
100 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||| || || ||||| ||||| | ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24485295 |
tgatctctcattctcagatagaacaattcctcaagcagtagcagttcttgatcatcaacattttagcttaccctttatgccagtttcagatctttggaga |
24485196 |
T |
|
| Q |
101 |
gacctaagaaaaatatgcaaaaaccaattattttctagccaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttaagtgata |
200 |
Q |
| |
|
||||||| |||| ||| ||||||||| || ||||||| | |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24485195 |
gacctaaaaaaattatacaaaaaccatttgttttctaacaaaacacttgatgctagtaatgaacttaggtgtaagaagcttcaagagcttttaagtgata |
24485096 |
T |
|
| Q |
201 |
tagaaaaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
300 |
Q |
| |
|
| || | ||||||||||| | || |||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24485095 |
ttgatagaagcagcttaacttgtaaagcagtagatgttggaagagctacttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
24484996 |
T |
|
| Q |
301 |
tgttaactctgcaggtgaaactgatgaatataaagggatagttgaaaatcttgtgagggcaataggaactccaaa |
375 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
24484995 |
tgttaactccacaggtgaaactgatgagtataaagatattgttgaaaatcttgtgagagcaataggaacaccaaa |
24484921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 377
Target Start/End: Complemental strand, 24468776 - 24468420
Alignment:
| Q |
21 |
gaacaattcctcaagccgtcgcggttctcgatcacgactattttagcttaccctttatgccagtttgtgatctttggagagacctaagaaaaatatgcaa |
120 |
Q |
| |
|
|||||||||||||||| || || ||||| | ||| || ||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
24468776 |
gaacaattcctcaagctgtagcagttcttggtcatgaacattttagcttaccatttatgccaatgtcaaatctttggagagacctaagaaaaatatgcaa |
24468677 |
T |
|
| Q |
121 |
aaaccaattattttctagccaaactcttgatgctagccatgcacttaggtgtaagaagcttcaagagcttttaagtgatatagaaaaaagcagcttaatt |
220 |
Q |
| |
|
|||| | || ||||||| | ||||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||| || | ||| ||||| || |
|
|
| T |
24468676 |
aaacaatttgttttctaacaaaactcttgatgctagcaatgaacttaggtgtaagaagctgcaagagcttttatgtgatattgatagaagtagcttggtt |
24468577 |
T |
|
| Q |
221 |
ggtgaagctgttgatgtaggaagagctgcttttaagacttcattgaattttttgtcaaacacttttttctctatggattttgttaactctgcaggtgaaa |
320 |
Q |
| |
|
|||||||| || ||||| | | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24468576 |
ggtgaagcagtggatgttgagaaagctgcttttaagactttgttgaatgttttgtcaaacacttttttctccatggattttgttaactctgcaggtgaaa |
24468477 |
T |
|
| Q |
321 |
ctgatgaatataaagggatagttgaaaatcttgtgagggcaataggaactccaaact |
377 |
Q |
| |
|
||||||| ||||||| |||||||||| |||| ||| ||||||||||| ||||||| |
|
|
| T |
24468476 |
ctgatgagtataaagatatagttgaaagtcttatgacagcaataggaacaccaaact |
24468420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 41128230 - 41128310
Alignment:
| Q |
206 |
aaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagactt-cattgaattttttgtcaaacactttt |
286 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||| |||| |||||||||||| | |||||| |
|
|
| T |
41128230 |
aaaagcagcataactggtgaagctgttgatgttggaagagctgctttcaaggcttgcatt-aattttttgtcatatactttt |
41128310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 41144451 - 41144371
Alignment:
| Q |
206 |
aaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagactt-cattgaattttttgtcaaacactttt |
286 |
Q |
| |
|
||||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||| |||| |||||||||||| | |||||| |
|
|
| T |
41144451 |
aaaagcagcataactggtgaagctgttgatgttggaagagctgctttcaaggcttgcatt-aattttttgtcatatactttt |
41144371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 41120035 - 41119955
Alignment:
| Q |
206 |
aaaagcagcttaattggtgaagctgttgatgtaggaagagctgcttttaagactt-cattgaattttttgtcaaacactttt |
286 |
Q |
| |
|
||||||||||||| ||||||||||||||| | |||||||||||||| ||| ||| |||| |||||||||||| | |||||| |
|
|
| T |
41120035 |
aaaagcagcttaaccggtgaagctgttgatattggaagagctgctttcaaggcttgcatt-aattttttgtcatatactttt |
41119955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 29975024 - 29974972
Alignment:
| Q |
248 |
gcttttaagacttcattgaattttttgtcaaacacttttttctctatggattt |
300 |
Q |
| |
|
||||||||||| ||| | ||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
29975024 |
gcttttaagacatcaatcaatttgttgtcaaacactattttctctattgattt |
29974972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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