View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_low_13 (Length: 372)
Name: NF9302_low_13
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_13 |
 | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0179 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 2230 - 1867
Alignment:
| Q |
1 |
actgtagcttctgcagcataattgctaccccagcaatgaaagtgaacctcacagacaataaaaactctccannnnnnnnncttgcggccattaagttaca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
2230 |
actgtaccttctgcagcataattgctaccccaacaatgaaagtgaacctcacagacaataaaaactgtccatttttttttcttgcggccattaagttaca |
2131 |
T |
|
| Q |
101 |
gagaaactagagggttgtgatgagtatatacaacatggttatcaactagtctgtaagtttttcttgagtatatacagcataattcattttttcttatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2130 |
gagaaactagagggttgtgatgagtatatacaacttggttatcaactagtctgtaagtttttcttgagtatatacagcataattcattttttcttatgtt |
2031 |
T |
|
| Q |
201 |
gctgccaaggtttagagagaaattggaagcagttgatgtgcatatcaatattaccaatcctcaaatttcattccaatttaaatatgaagaattagagtaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2030 |
gctgccaaggtttagagagaaattggaagcagttgatgtgcatatcaatattaccaatcctcaaatttcattccaatttaaatatgaagaattagagtaa |
1931 |
T |
|
| Q |
301 |
caaaaagtatcagcaatgaagtaggtaattaattactaaagtagaagaagagaagaacttagaa |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1930 |
caaaaagtatcagcaatgaagtaggtaattaattactaaagtagaagaagagaagaacttagaa |
1867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 15719278 - 15719345
Alignment:
| Q |
246 |
caatattaccaatcctcaaatttcattccaatttaaatatgaagaattagagtaacaaaaagtatcag |
313 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
15719278 |
caattttaccaatcctcaaattgcattcgaatttaaatatgaagatttagagaaacaaaaagtatcag |
15719345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 363
Target Start/End: Original strand, 16701105 - 16701187
Alignment:
| Q |
281 |
aatatgaagaattagagtaacaaaaagtatcagcaatgaagtaggtaattaattactaaagtagaagaagagaagaacttaga |
363 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
16701105 |
aatatgaagaattaaaacaacaaaaagtatcagcattgaaaaaggtaattaattactaaagtagcaagagagaagaacttaga |
16701187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University