View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_16 (Length: 355)
Name: NF9302_low_16
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 43531576 - 43531908
Alignment:
| Q |
1 |
tagctttttcttctctgtttctgctactcgagtctcatatgcctccactagatactgagaaatatggtagagtgcaataaagaaacaaataaattgtaag |
100 |
Q |
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| T |
43531576 |
tagctttttcttctctgtttctgctactcgagtctcatatgcctccactagatactgagaaatatggtagagtgcaataaagaaacaaataaattgtaag |
43531675 |
T |
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| Q |
101 |
aatgatcgtgtaactataggatagtaagaaactttaactaaccaacaattaatacaaaccaacttgtaagtagtcggtggcactaaatggataagctcta |
200 |
Q |
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| T |
43531676 |
aatgatcgtgtaactataggatagtaacaaactttaactaacctacaattaatacaaacca---------tagtcggtggcgctaaatggataagctcta |
43531766 |
T |
|
| Q |
201 |
ataccatattagaattttgagttgggcttaactcgacccatacaaaccagtttgtaaggtggtttgtaaggatgagttaggctcaatctaaaagcataat |
300 |
Q |
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| T |
43531767 |
ataccatattagaattttgagttgggcttaactcgacccatacaaaccagtttgtaaggcggtttgtaaggatgagttaggctcaatctaaaagcataat |
43531866 |
T |
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| Q |
301 |
atcaaagtgtcttttctaaccaaatgataacaaaactgatgt |
342 |
Q |
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| T |
43531867 |
atcaaagtgtcttttctaaccaaatgataacaaaactgatgt |
43531908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 24128116 - 24128063
Alignment:
| Q |
4 |
ctttttcttctctgtttctgctactcgagtctcatatgcctccactagatactg |
57 |
Q |
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| T |
24128116 |
ctttttcttctctgtttccgcaactcgagattcatatgcctccactagatactg |
24128063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 24145877 - 24145825
Alignment:
| Q |
5 |
tttttcttctctgtttctgctactcgagtctcatatgcctccactagatactg |
57 |
Q |
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| T |
24145877 |
tttttcttctctgtttctgcaagtcgagattcaaatgcctccaccagatactg |
24145825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 2249685 - 2249730
Alignment:
| Q |
216 |
tttgagttgggcttaactcgacccatacaaaccagtttgtaaggtg |
261 |
Q |
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| T |
2249685 |
tttgagttgggcctaactcaacccatacaaaaccgtttgtaaggtg |
2249730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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