View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_17 (Length: 352)
Name: NF9302_low_17
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_17 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 40785258 - 40785595
Alignment:
| Q |
17 |
aattagttcaattgattcaaccataattatactaacactcccaa--taagtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccac |
114 |
Q |
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| T |
40785258 |
aattaattcaattgattcaaccataattatactaacactagcaaaataagtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccac |
40785357 |
T |
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| Q |
115 |
tatatgtctctctaactctctcacttccatctacccttatgtcatctatatatatgtctagaaacctacactcattctcatgcttttattcttcctacta |
214 |
Q |
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| T |
40785358 |
tatctgtctctctaactctctcacttccacccacctttatgtcatctatatatatgtctagaaacctacactcattctcatgcttttattcttcctacta |
40785457 |
T |
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| Q |
215 |
ctttttcctataccactaagtctaattccctttatctttctctattatcaagatgaccatgaacaaagttaataaatctcaagttatagttctctctatc |
314 |
Q |
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| T |
40785458 |
ctttttcctataccactaagtctaattccctttatctttctctattatcaagatgaccatgaacaaagttaataaatctcaagttatagttctctctatc |
40785557 |
T |
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| Q |
315 |
ttacttcttctccttgtgatcacacccttattaccttc |
352 |
Q |
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| T |
40785558 |
ttacttcttctccttgtgatcacacccttgttaccttc |
40785595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 352
Target Start/End: Original strand, 40793265 - 40793350
Alignment:
| Q |
267 |
atgaccatgaacaaagttaataaatctcaagttatagttctctctatcttacttcttctccttgtgatcacacccttattaccttc |
352 |
Q |
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| T |
40793265 |
atgaccatgaacaaagttgataaatctcaagtaatagttctctctttcctagcttttctccttgtgatcacacccttcttaccttc |
40793350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 40793026 - 40793183
Alignment:
| Q |
63 |
agtaaaacaactcttattctcaaacaacaatgatgtaaccaacaatttccactatatgtctctcta--actctctcacttccatctacccttatgtcatc |
160 |
Q |
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||||||| | || ||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||| | || || ||| ||||||| || |
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| T |
40793026 |
agtaaaatatctattattctcaaa-aacaatgatgtaaccaacaaattccactatttgtctctctacttctctctgatctctttccacctttatgtcctc |
40793124 |
T |
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| Q |
161 |
tatatat-atgtctagaaacctacactcattctcatgcttttattcttcctactacttttt |
220 |
Q |
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| T |
40793125 |
tatatataatgtctagaacaccacactcaatcccatgcttt--ttcttcctactacttttt |
40793183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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