View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9302_low_2 (Length: 704)

Name: NF9302_low_2
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9302_low_2
NF9302_low_2
[»] chr3 (10 HSPs)
chr3 (323-689)||(5578357-5578722)
chr3 (11-272)||(5578100-5578361)
chr3 (62-128)||(32077480-32077546)
chr3 (62-128)||(51646885-51646951)
chr3 (77-128)||(4737800-4737851)
chr3 (62-128)||(46835541-46835607)
chr3 (204-261)||(5559694-5559750)
chr3 (90-127)||(8508672-8508709)
chr3 (62-112)||(8507228-8507279)
chr3 (204-261)||(5551145-5551200)
[»] chr4 (8 HSPs)
chr4 (335-591)||(36001425-36001663)
chr4 (335-418)||(23637807-23637889)
chr4 (517-591)||(23637949-23638024)
chr4 (62-121)||(47965540-47965599)
chr4 (85-142)||(14866628-14866686)
chr4 (87-128)||(30179071-30179112)
chr4 (453-494)||(23637906-23637947)
chr4 (77-114)||(52525953-52525990)
[»] chr1 (3 HSPs)
chr1 (335-417)||(1632115-1632197)
chr1 (62-137)||(20602208-20602284)
chr1 (77-128)||(29308696-29308747)
[»] chr8 (3 HSPs)
chr8 (77-128)||(14836399-14836450)
chr8 (77-128)||(27229237-27229288)
chr8 (77-128)||(30850214-30850265)
[»] chr6 (2 HSPs)
chr6 (77-128)||(29279776-29279827)
chr6 (77-129)||(9852102-9852154)
[»] chr2 (4 HSPs)
chr2 (77-128)||(28296914-28296965)
chr2 (77-128)||(24538237-24538288)
chr2 (77-121)||(22142305-22142349)
chr2 (94-128)||(7828944-7828978)
[»] chr7 (2 HSPs)
chr7 (77-138)||(27965240-27965304)
chr7 (77-121)||(45824591-45824635)
[»] scaffold0596 (1 HSPs)
scaffold0596 (77-124)||(1695-1742)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 323 - 689
Target Start/End: Original strand, 5578357 - 5578722
Alignment:
Q  323 cttttcgtgaagttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcacatcct 422  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  5578357 cttttcgttaagttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcac-ttaccatggatgcatcctttgagcacatccc 5578455  T
Q  423 gttgtatatcaccttctaaaatcactacctactgtgcatgaaattaaaattagcacatccctttaaaacctaacatatgaatcaagaaggacaatgaaaa 522  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  5578456 gttgtatatcgccttctagaatcactacctactgtgtatgaaattaaaattagcacatccctttaaaaccaaacatatgaatcaagaaggacattgaaaa 5578555  T
Q  523 gatttatttcattaaaccgattgaagaaacaccgtaaaaggttgagcgatggagattaaaagaagaaaaccgaattcgagagaaagaatacaagataatt 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5578556 gatttatttcattaaaccgattgaagaaacaccgtaaaaggttgagcgatggagattaaaagaagaaaaccgaattcgagagaaagaatacaagagaatt 5578655  T
Q  623 cttttaattcatttttctttatttcaagttggtctgagcaatggaatgaagttcgggagagagaaat 689  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  5578656 cttttaattcatttttctttaattcaagttggtctgagcaatggaatggagttcgggagagagaaat 5578722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 5578100 - 5578361
Alignment:
Q  11 cacagatgcatctaactgccataacaacttttttggctccaaactgttctggccaaaaccatctacattagggttggcacaaattgttaacaatgttatt 110  Q
    |||| ||||||||||| |||| ||||  ||||||||||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||||||||    
T  5578100 cacaaatgcatctaacggccagaacagtttttttggctccaaattgttctagccaaaaccatcagaattagggttggcacaaattgttaacaatgttatt 5578199  T
Q  111 catattagaaataagtatatatgatatgatataactagattattcaaaagatcgacttatatctctctcctttataatagaagtttactttgtagaaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578200 catattagaaataagtatatatgatatgatataactagattattcaaaagatcgacttatatctctctcctttataatagaagtttactttgtagaaaat 5578299  T
Q  211 gaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaatagttggctttt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578300 gaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaatagttggctttt 5578361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 32077480 - 32077546
Alignment:
Q  62 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  32077480 gccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtat 32077546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 51646951 - 51646885
Alignment:
Q  62 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    ||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51646951 gccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtat 51646885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 4737800 - 4737851
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4737800 attagggttggcacaatttgttagcaatgttattcatattagaaataagtat 4737851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 46835541 - 46835607
Alignment:
Q  62 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||||| | |||||||||| ||||| ||||||| | |||||||||||||||||||||||||    
T  46835541 gccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtat 46835607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 5559694 - 5559750
Alignment:
Q  204 agaaaatgaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaat 261  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  5559694 agaaaatgaaaaatacgcgtggcaggacattt-gcttactatcatgaattgcttaaat 5559750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 8508672 - 8508709
Alignment:
Q  90 caaattgttaacaatgttattcatattagaaataagta 127  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8508672 caaattgttaacaatgttattcatattagaaataagta 8508709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 8507228 - 8507279
Alignment:
Q  62 gccaaaaccatctacatta-gggttggcacaaattgttaacaatgttattca 112  Q
    |||||||||||| | |||| |||||||||||||||||||||||| |||||||    
T  8507228 gccaaaaccatcaagattaagggttggcacaaattgttaacaatattattca 8507279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 5551145 - 5551200
Alignment:
Q  204 agaaaatgaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaat 261  Q
    ||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  5551145 agaaaatgaaatatacgcgtggtaga-cattt-gcttactatcatgaatttcttaaat 5551200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 335 - 591
Target Start/End: Original strand, 36001425 - 36001663
Alignment:
Q  335 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcacatcctgttgtatatcac 434  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||           ||||     
T  36001425 ttttctaatttattaattgtatatcg-tttgaaattagtagaaacaaaatcctcacattaccatggatgcatcatttgagcacaga---------atca- 36001513  T
Q  435 cttctaaaatcactacctactgtgcatgaaattaaaattagcacatccctttaaaacctaacatatgaatcaagaaggacaatgaaaagattta-tttca 533  Q
            |||||  || ||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||| || |||||||||||| |||||    
T  36001514 --------atcaccgccaactgtgcatgaaattaaaattagcacaacccaataaaacctaacatatgaatctagaaggccattgaaaagatttattttca 36001605  T
Q  534 ttaaaccgattgaagaaacaccgtaaaaggttgagcgatggagattaaaagaagaaaa 591  Q
    |||||||||||||||||| || ||||||||||||||||||||| | || |||||||||    
T  36001606 ttaaaccgattgaagaaaaactgtaaaaggttgagcgatggagttgaagagaagaaaa 36001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 418
Target Start/End: Original strand, 23637807 - 23637889
Alignment:
Q  335 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcaca 418  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  23637807 ttttctaatttattaattgtatatcg-tttgaaattagtagaaacaaaatcctcacattaccatggatgcatcatttgagcaca 23637889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 517 - 591
Target Start/End: Original strand, 23637949 - 23638024
Alignment:
Q  517 tgaaaagatttattt-cattaaaccgattgaagaaacaccgtaaaaggttgagcgatggagattaaaagaagaaaa 591  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| | || |||||||||    
T  23637949 tgaaaagatttattttcattaaaccgattgaagaaaaactgtaaaaggttgagcgatggagttgaagagaagaaaa 23638024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 47965540 - 47965599
Alignment:
Q  62 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaa 121  Q
    ||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  47965540 gccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 14866628 - 14866686
Alignment:
Q  85 tggcacaaattgttaacaatgttattcatattagaaataagtat-atatgatatgatat 142  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgatatgatatgatat 14866686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 30179071 - 30179112
Alignment:
Q  87 gcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  30179071 gcacaatttgttagcaatgttattcatattagaaataagtat 30179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 494
Target Start/End: Original strand, 23637906 - 23637947
Alignment:
Q  453 actgtgcatgaaattaaaattagcacatccctttaaaaccta 494  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  23637906 actgtgcatgaaattaaaattagcacaacccaataaaaccta 23637947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 52525953 - 52525990
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcata 114  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  52525953 attagggttgacacaaattgttagcaatgttattcata 52525990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 335 - 417
Target Start/End: Original strand, 1632115 - 1632197
Alignment:
Q  335 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcac 417  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| |  |||||||||    
T  1632115 ttttctaatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtggtttgagcac 1632197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 20602284 - 20602208
Alignment:
Q  62 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat-atatgatat 137  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  20602284 gccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgatatgatat 20602208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 29308747 - 29308696
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  29308747 attaaggttgacacaatttgttaacaatgttattcatattagaaataagtat 29308696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 14836450 - 14836399
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14836450 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 14836399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 27229288 - 27229237
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  27229288 attagggttgacgcaaattattaacaatgctattcatattagaaataagtat 27229237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 30850214 - 30850265
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||||||||| || ||| || |||||||||||||||||||||||||    
T  30850214 attagggttggcacaattttttagcagtgttattcatattagaaataagtat 30850265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 29279827 - 29279776
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtat 29279776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 9852154 - 9852102
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtata 129  Q
    |||||||||||||||| || ||| || ||||||||||||||||||||||||||    
T  9852154 attagggttggcacaattttttagcagtgttattcatattagaaataagtata 9852102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 28296914 - 28296965
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtat 28296965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 24538288 - 24538237
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 128  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  24538288 attagggttgacacaatttgttaacattgttattcatattagaaataagtat 24538237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaa 121  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 7828944 - 7828978
Alignment:
Q  94 ttgttaacaatgttattcatattagaaataagtat 128  Q
    ||||||||| |||||||||||||||||||||||||    
T  7828944 ttgttaacattgttattcatattagaaataagtat 7828978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 27965240 - 27965304
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttatt--catattagaaataagtat-atatgatatg 138  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  27965240 attagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgatatgatatg 27965304  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 45824635 - 45824591
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaa 121  Q
    ||||||||||||||||||||||| ||||| ||||  |||||||||    
T  45824635 attagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

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Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 1695 - 1742
Alignment:
Q  77 attagggttggcacaaattgttaacaatgttattcatattagaaataa 124  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  1695 attagggttggcacaaaatgttaacattgttattcatattagaaataa 1742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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