View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_22 (Length: 287)
Name: NF9302_low_22
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 42314116 - 42313866
Alignment:
| Q |
25 |
cttctacatattcgtgagttttgattaagtgaaacgcacaatccatacccaccatgttcattgtaagttctccaagttagattgttattatttatcatta |
124 |
Q |
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| T |
42314116 |
cttctacatattcgtgagttttgattaagtgaaacgcacaatccatatccaccatgttcattgtaagttctccaagttagattgttattatttatcatta |
42314017 |
T |
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| Q |
125 |
tcatgattattttggtagttaaatggtt-atttggcttatgtgtttgtatataggaattagattgtccgtccagtgtcaagaagcaattggcggagctgt |
223 |
Q |
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| T |
42314016 |
tcatgattattttggtagttaaatggttgttttggcttatgtgtttttatataggaattagattgtccgtccagtgtcaagaagcaattggcggagctgt |
42313917 |
T |
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| Q |
224 |
ttcgagaatctctgaaagcaactgtgcctagtgaacctgatgttgttccct |
274 |
Q |
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| T |
42313916 |
ttcgagaatctctgaaagcaactgtgcctagtgaacctgatgttgttccct |
42313866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 47978897 - 47978788
Alignment:
| Q |
165 |
tgtttgtatataggaattagattgtccgtccagtgtcaagaagcaattggcggagctgtttcgagaatctctgaaagcaactgtgcctagtgaacctgat |
264 |
Q |
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| T |
47978897 |
tgtttatatataggaattagatgctcctgcgagtgtcaggaagcaattggctacgttgtttcgggaagctctcattgctactgttcccactgaacctgat |
47978798 |
T |
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| Q |
265 |
gttgttccct |
274 |
Q |
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| T |
47978797 |
gttgttccct |
47978788 |
T |
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