View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_28 (Length: 258)
Name: NF9302_low_28
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 11191004 - 11190751
Alignment:
| Q |
1 |
ttctatctcttttctctattcaacttttcaacatacatatattattattcactcctttcaagttctcaaaatgttttaagattgatgttttctttctatc |
100 |
Q |
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| T |
11191004 |
ttctatctcttttctctattcaactttgcaacatacatatattattattcactcctttcaagttctcaaaatgttttaagattgatgttttctttctatc |
11190905 |
T |
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| Q |
101 |
tcatttttaatcatagagaaatatcaacaacttaggaattatgtatgatgttaccacataggactatgcttttaaaatgtacaatttaatcataactatg |
200 |
Q |
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| T |
11190904 |
tcatttttaagcatagagaaatatcaacaacttaggaattatgtatgatgttaccacataggactatgcttttaaaatgtacaatttaatcataactatg |
11190805 |
T |
|
| Q |
201 |
attctaattgctataatatt---attaactgcagcatgttaggcacaacaccat |
251 |
Q |
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| T |
11190804 |
attctaattgctataatattattattaactgcagcatgttaggcacaacaccat |
11190751 |
T |
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