View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_3 (Length: 523)
Name: NF9302_low_3
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 32381984 - 32382479
Alignment:
| Q |
13 |
atggacatcagatccagttcctaagaagccgctttccagatgaagtaacacagttatcaagatacttgtacaatgtacctggaacacaagcagaacagac |
112 |
Q |
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| T |
32381984 |
atggacaacagatccagttcctaagaagccgctttccagatgaagtaacacagttatcaagatacttgtacaatgtacctggaacacaagcagaacagac |
32382083 |
T |
|
| Q |
113 |
tttttaatactgaaatttccaatgtaatatgttagagggttaagagtgctcaaatagaacaagcacttgcctgcttttccaccatcgttgctattgccaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382084 |
tttttaatactgaaatttccaatgtaatatgttagagggttaagagtgctcaaatagaacaagcacttgcctgcttttccaccatcgttgctattgccaa |
32382183 |
T |
|
| Q |
213 |
agatttctagatttatataggttggaccatccattttgaggcaacccttataaacctggtatggataaatgtccccgttctgaaggacctcatctagctg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382184 |
agatttctagatttatataggttggaccatccattttgaggcaacccttataaacctggtatggataaatgtccccgttctgaaggacctcatctagctg |
32382283 |
T |
|
| Q |
313 |
tatgaa---aagaacagattactcattataaacaacatagttgcacactgctcaaaaaaggtatcacagtaaacacaaagctataccatcaatctattca |
409 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382284 |
tatgaaaagaagaacagattactcattataaacaacatagttgcacactgctcaaaaaaggtatcacagtaaacacaaagctataccatcaatctattca |
32382383 |
T |
|
| Q |
410 |
gatgacctatcagtccaccaagagcagataacgtgatttcacagtgaatcacattggtcagcacatgatccagtgaattagacgaacccttaaagt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32382384 |
gatgacctatcagtccaccaagagcagataacgtgatttcacagtgaatcacattggtcagcacatgatccagtgaattagacgaacccttaaagt |
32382479 |
T |
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