View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_low_32 (Length: 250)
Name: NF9302_low_32
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_32 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 43218079 - 43217840
Alignment:
| Q |
9 |
agcagagaccaaaataaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatag |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
43218079 |
agcagtgaccaaaataaaaccacacaaacatgagaatagagaacaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatag |
43217982 |
T |
|
| Q |
109 |
tagatgtatcccagagctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43217981 |
tagatgtatcccagagctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccag |
43217882 |
T |
|
| Q |
209 |
cgttgtagggagagcaacagaatcatagaaaccatcggaatc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43217881 |
cgttgtagggagagcaacagaatcatagaaaccatcggaatc |
43217840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 43170257 - 43170496
Alignment:
| Q |
9 |
agcagagaccaaaataaaaccacacaaacatgagagtagagaacaatttcaagtttaaaaacaatacaaagaacacgagcagcatttacccgtgtcatag |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
43170257 |
agcagtgaccaaaataaaaccacacaaacatgagaatagagaaaaatttcaagtttaaaaacaatacaaagaacacaagcag--tttacccgtgtcatag |
43170354 |
T |
|
| Q |
109 |
tagatgtatcccagagctggacaatggaattcatgaaaccaatggcttaaatgtgtccatctggctcccagctaacacttgtgataggaccatcttccag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43170355 |
tagatgtatcccagagctggacaatggaattcatcaaaccaatggctaaaatgtgtccatctggctgccagctaacacttgtgataggaccatcttccag |
43170454 |
T |
|
| Q |
209 |
cgttgtagggagagcaacagaatcatagaaaccatcggaatc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43170455 |
cgttgtagggagagcaacagaatcatagaaaccatcggaatc |
43170496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University