View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_39 (Length: 241)
Name: NF9302_low_39
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 27770625 - 27770829
Alignment:
| Q |
19 |
ttattgaggaaattggatctaggtttggtatctatgaagaggaagctttatgttattttgttatgggatttccattatttgtgtatgtaaagggagttag |
118 |
Q |
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| T |
27770625 |
ttattgaggaaattggatttaggtttggtatctatgaagaggaagctttatgttattttgttatgggatttccagtatttgtgtatgtaaagggagttag |
27770724 |
T |
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| Q |
119 |
aactacatagattataagtctgctaattgtgaatggattcgtgaagaggaaatttttgggatatacatggtatttggtctgcttgactgtttctggcgtg |
218 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
27770725 |
aactacatcgattataagtctgctaactgtgaatggattcgtgaagagggaa-tttcggaatatacatggtatttggtctgcttgactgtttctggcgtg |
27770823 |
T |
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| Q |
219 |
tcatct |
224 |
Q |
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|||||| |
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| T |
27770824 |
tcatct |
27770829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 12873473 - 12873678
Alignment:
| Q |
18 |
attattgaggaaattggatctaggtttggtatctatgaagaggaagctttatgttattttgttatgggatttccattatttgtgtatgtaaagggagtta |
117 |
Q |
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||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12873473 |
attattgaggaaattggatttaggtctg-tatctatgaagaggaagctttatgttattttgttatgggatttccagtatttgtgtatgtaaagggagtta |
12873571 |
T |
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| Q |
118 |
gaactacatagattataagtctgctaattgtgaatggattcgtgaagaggaaatttttgggatatacatggtatttggtctgcttgactgtttctggcgt |
217 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12873572 |
gaactacatcgattataagtcgtctaattgtgaatggattcgtgaagagggaatttttgggatatagatggtatttggtctgcttgactgtttctggcgt |
12873671 |
T |
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| Q |
218 |
gtcatct |
224 |
Q |
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||||||| |
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| T |
12873672 |
gtcatct |
12873678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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