View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_43 (Length: 238)
Name: NF9302_low_43
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_43 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 31129560 - 31129782
Alignment:
| Q |
16 |
tctagaaccaaaaaacaaaactataatcttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggnnnnnnnccacaatattcat |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31129560 |
tctagaaccaaaaaccaaaactataatcttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggaaaaaaaccacaatattcat |
31129659 |
T |
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| Q |
116 |
tagccaaattctcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagtaatttcttcagcagaagtagcacaagaagtgct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31129660 |
tagccaaattctcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagttatttcttcagcagaagtagcacaagaagtgct |
31129759 |
T |
|
| Q |
216 |
tcaaacacatgatatcttattct |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
31129760 |
tcaaacacatgatatcttattct |
31129782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 31137630 - 31137414
Alignment:
| Q |
18 |
tagaaccaaaaaacaaaactataatcttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggnnnnnnnccacaatattcatta |
117 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||| | || |||| ||||||||||||||||||||||| |||||| | |||||| |
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| T |
31137630 |
tagaaccaaaaaacaaaattacaatcttccaccaggaccttcacctcttgcaattatgctaaacgtttttgaattaggaaaaaaaccacaacaatcatta |
31137531 |
T |
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| Q |
118 |
gccaaattctcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagtaatttcttcagcagaagtagcacaagaagtgcttc |
217 |
Q |
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| T |
31137530 |
gccaaattctcaaaaatatatggtccaataatgcatatgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagttctac |
31137431 |
T |
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| Q |
218 |
aaacacatgatatctta |
234 |
Q |
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||||||||||| ||||| |
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| T |
31137430 |
aaacacatgatctctta |
31137414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 31151408 - 31151625
Alignment:
| Q |
18 |
tagaaccaaaaaacaaaactataatcttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggnnnnnnn-ccacaatattcatt |
116 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||| | || |||| |||||||||||||||||| | || |||||| | ||||| |
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| T |
31151408 |
tagaaccaaaaaacaaaattacaatcttccaccaggaccttcacctcttgcaattatgctaaacgtttttgaacttggaaaaaaaaccacaacaatcatt |
31151507 |
T |
|
| Q |
117 |
agccaaattctcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagtaatttcttcagcagaagtagcacaagaagtgctt |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31151508 |
agccaaattctcaaaaatatatggtccaataatgcatatgaagctagggcaaataactaccattataatttcttcagcagaagtagcacaagaagtgcta |
31151607 |
T |
|
| Q |
217 |
caaacacatgatatctta |
234 |
Q |
| |
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|||||||||||| ||||| |
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| T |
31151608 |
caaacacatgatctctta |
31151625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 24469003 - 24468793
Alignment:
| Q |
18 |
tagaaccaaaaaacaaaactataatcttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggnnnnnnnccacaatattcatta |
117 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||| | ||||||| ||| ||| |||||||||||||| |||||||| |||||| |
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| T |
24469003 |
tagaaccaaaaaacaaaagtacaatcttccaccaggtccttcacttcttacaattatgagaaatgtttttgaattaggaaaaaaaccacaatactcatta |
24468904 |
T |
|
| Q |
118 |
gccaaattctcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagtaatttcttcagcagaagtagcacaagaagtgcttc |
217 |
Q |
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||||||||||| |||||| |||| ||||||||||||||||||||||| |||||| |||| ||||||||||| ||| |||| |||||||||||||| ||| |
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| T |
24468903 |
gccaaattctccaaaatatatggcccaataatgcatttaaagctaggtcaaataacaactatagtaatttcatcaccagatatagcacaagaagtgtttc |
24468804 |
T |
|
| Q |
218 |
aaacacatgat |
228 |
Q |
| |
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|||| |||||| |
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| T |
24468803 |
aaacccatgat |
24468793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 24490258 - 24490058
Alignment:
| Q |
18 |
tagaaccaaaaaacaaaactataatcttccaccaggaccttcacgttttacaataatgctaaacgtttttgaattaggnnnnnnnccacaatattcatta |
117 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| ||||||| | ||||||| || | ||| |||||||||||||| |||||||| |||||| |
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| T |
24490258 |
tagaaccaaaaaacaaaagtacaatcttccaccaggtccttcacctcttacaattatacgaaatgtttttgaattaggaaaaaatccacaatactcatta |
24490159 |
T |
|
| Q |
118 |
gccaaattctcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagtaatttcttcagcagaagtagcacaagaagtgcttc |
217 |
Q |
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||||||||||| |||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
24490158 |
gccaaattctccaaaatatatggcccaataatgcatttgaagctaggtcaaatttcaaccatagtaatttcatcaccagatatagcacaagaagtgcttc |
24490059 |
T |
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| Q |
218 |
a |
218 |
Q |
| |
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| T |
24490058 |
a |
24490058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 18092112 - 18092212
Alignment:
| Q |
127 |
tcaaaaatacatggtccaataatgcatttaaagctagggcaaatatcaaccatagtaatttcttcagcagaagtagcacaagaagtgcttcaaacacatg |
226 |
Q |
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||||| || ||||||||||||||| ||||| |||| ||| || ||||||||||||| || |||||||| ||||| ||||||| || |||||||||| |
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| T |
18092112 |
tcaaacattcatggtccaataatgacactaaagttaggccaagtaacaaccatagtaatatcctcagcagacatagcaaaagaagttctacaaacacatg |
18092211 |
T |
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| Q |
227 |
a |
227 |
Q |
| |
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| |
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|
| T |
18092212 |
a |
18092212 |
T |
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