View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_45 (Length: 225)
Name: NF9302_low_45
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 36196590 - 36196802
Alignment:
| Q |
10 |
agaagcacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaa |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196590 |
agaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaa |
36196689 |
T |
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| Q |
110 |
aatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196690 |
aatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttca |
36196789 |
T |
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| Q |
210 |
tcatctctgctac |
222 |
Q |
| |
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||||||||||||| |
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| T |
36196790 |
tcatctctgctac |
36196802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 36188278 - 36188484
Alignment:
| Q |
15 |
cacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
114 |
Q |
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|||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188278 |
cacagaggaaattactgcaagaaaaaggg-aaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaaaatct |
36188376 |
T |
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| Q |
115 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188377 |
tagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttcatcatc |
36188476 |
T |
|
| Q |
215 |
tctgctac |
222 |
Q |
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|||||||| |
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| T |
36188477 |
tctgctac |
36188484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 36209714 - 36209925
Alignment:
| Q |
10 |
agaagcacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttgacagaatacaa |
109 |
Q |
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|||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
36209714 |
agaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttgacagaatacaa |
36209813 |
T |
|
| Q |
110 |
aatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattttca |
209 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
36209814 |
aatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagattttca |
36209912 |
T |
|
| Q |
210 |
tcatctctgctac |
222 |
Q |
| |
|
||||||||||||| |
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| T |
36209913 |
tcatctctgctac |
36209925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 36198878 - 36198958
Alignment:
| Q |
118 |
ttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggactt |
199 |
Q |
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|||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
36198878 |
ttcatctataccta-aaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagactt |
36198958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 36207688 - 36207824
Alignment:
| Q |
81 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaa |
179 |
Q |
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||||| ||||||||||| |||||| | |||||||||||||||| || | | ||||| ||| | | |||||||||||||||||||||||||||||| | | |
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| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaat-cacatgtgaacctctaatctctccaacatggtgttttcgata |
36207786 |
T |
|
| Q |
180 |
cgatgtgcatgtttggacttatgattttcatcatctct |
217 |
Q |
| |
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||||||||||||||||||| |||||||||| |||| |
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| T |
36207787 |
tgatgtgcatgtttggacttcaaattttcatcaactct |
36207824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
107 |
caaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggacttatgattt |
206 |
Q |
| |
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|||| ||||| || ||||||||| ||||| |||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||||||||| |||| |
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| T |
36214722 |
caaagtcttaattgatctataccaacaaa-gcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaattt |
36214820 |
T |
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| Q |
207 |
tcatcatctctgc |
219 |
Q |
| |
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||| ||||||||| |
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| T |
36214821 |
tcaccatctctgc |
36214833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 36184500 - 36184643
Alignment:
| Q |
81 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctatacctacaaaagcacttctcaac----ctctaatctctccaacatggtgttttc |
175 |
Q |
| |
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||||| ||||||||||| |||||| | ||||||||||||||||||| | | || ||||||||| | ||| ||||||||||||||||||||||| ||| |
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| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaac-aaagcacttgtgaacctctctctaatctctccaacatggtgtcttc |
36184598 |
T |
|
| Q |
176 |
caaacgatgtgcatgtttggacttatgattttcatcatctctgct |
220 |
Q |
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| | ||| | ||||||||||||| ||||||||||| ||||||| |
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| T |
36184599 |
cgtatgatattcatgtttggacttcagattttcatcaactctgct |
36184643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Original strand, 36200857 - 36200944
Alignment:
| Q |
106 |
acaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttg |
194 |
Q |
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|||||||||||||||||||| ||| ||| | |||| | |||||| |||||| ||||||||||||| |||||| | |||||||||||||| |
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| T |
36200857 |
acaaaatcttagttcatctacaccaacaca-gcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgtttg |
36200944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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