View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_low_46 (Length: 215)
Name: NF9302_low_46
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 278913 - 279103
Alignment:
| Q |
11 |
tagattattcttgttcatgcttggttgaggggacagttttcctaactggaactggttttggtgtttgagggaatgagaaaaaatctatggatcttgattt |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278913 |
tagattcttcttgttcatgcttggttgaggggacagttttcctaactggaactggttttggtgtttgagggaatgagaaaaaatctatggatcttgattt |
279012 |
T |
|
| Q |
111 |
gtgggtatcaatcttagaataagcattcattttcagatatagtactatgtatagtagatagagg-----tatacacaagagagtgtgaatg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
279013 |
gtgggtatcaatcttagaataagcattcattttcagatatagtactatgtatagtagatagaggtgagttatacacaagagagtgtgaatg |
279103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University