View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9302_low_6 (Length: 500)
Name: NF9302_low_6
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 182 - 495
Target Start/End: Complemental strand, 26613638 - 26613320
Alignment:
| Q |
182 |
catacaaatccgtatcctttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcatttcat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26613638 |
catacaaatccgtatcctttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcatttcat |
26613539 |
T |
|
| Q |
282 |
cagttggagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgtgatcgataatgtggataagccattgctactat--a |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26613538 |
cagttggagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgtgatcgataatgtggataagccattgctactataga |
26613439 |
T |
|
| Q |
380 |
gttcttgatattcttcttgctatagctagtttatgcatgcatcaagaagtgtac---tactcttggcattatcattctcatctcttgtcttcaaagtttt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26613438 |
gttcttgatattcttcttgctatagctagtttatgcatgcatcaagaagtgtactagtactcttggcattatcattctcatctcttgtcttcaaagtttt |
26613339 |
T |
|
| Q |
477 |
ctttctttcctttgcttct |
495 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
26613338 |
ctttctttcttttgcttct |
26613320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 26613803 - 26613703
Alignment:
| Q |
16 |
tcttcttccatcaattactgggtttggatcagcacaagcccttctagctgattctggatcacgaaatgttacctgcacattcaatatttatcatatcata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26613803 |
tcttcttccatcaattactgggtttggatcagcacaagcccttctagctgattctggatcacgaaatgttacctgcacaatcaatatttatcatatcata |
26613704 |
T |
|
| Q |
116 |
t |
116 |
Q |
| |
|
| |
|
|
| T |
26613703 |
t |
26613703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 336
Target Start/End: Complemental strand, 9036636 - 9036484
Alignment:
| Q |
184 |
tacaaatccgtatcctttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcatttcatca |
283 |
Q |
| |
|
|||||| || || ||||||||| |||| || | |||||||||||||| |||||||| | || || ||||||||||||||||| |||||||| || |
|
|
| T |
9036636 |
tacaaaaccataacctttagatcttccagtatacttatcagtgataacaacagcttctaagatctctccaaattgttcaaaatacattctcattgtttcc |
9036537 |
T |
|
| Q |
284 |
gttggagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtc |
336 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| | || || ||||||||||| |
|
|
| T |
9036536 |
ctttgagtttcccaagctaaccctccaacaaataatttggtaaatgttgtgtc |
9036484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 12141590 - 12141532
Alignment:
| Q |
288 |
gagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgt |
346 |
Q |
| |
|
||||||||||||| | ||||||||||||||| || ||| | |||||||| ||||||||| |
|
|
| T |
12141590 |
gagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgt |
12141532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University