View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9302_low_8 (Length: 493)
Name: NF9302_low_8
Description: NF9302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9302_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 4 - 476
Target Start/End: Complemental strand, 43742904 - 43742431
Alignment:
| Q |
4 |
aatgcaacgagacttagttacgcggatctttctaatgagaaatataaggtattgtcatgtagataaagatatatcttagtgtttgtaat-gattcacatt |
102 |
Q |
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| T |
43742904 |
aatgcaacgagacttagttacgcggatctttctaatgagaaatataaggtattgtcatgtagataaagatatatcttagtgtttgtaattgattcacatt |
43742805 |
T |
|
| Q |
103 |
ataatggatgaagtcctccaccaccttctctttcactttgcnnnnnnnnctttccaaaacaacaatgatggcgacaaagatctcaactcccttgatgagc |
202 |
Q |
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| T |
43742804 |
ataatggatgaagtcctccaccaccttctctttcactttgcaaaaaagactttccaaaacaacaatgatggcgacgaagatctcaactcccttgatgagc |
43742705 |
T |
|
| Q |
203 |
ttggagattcctccaccacttcgacgacaacgatgaaggggacaacgactttggcaacttgtccggcttggaccatcacatagaagacgagttcaagtag |
302 |
Q |
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| T |
43742704 |
ttggagattcctccaccacttcgacgacaacgatgaaggggacaacgactttggcaacttgtccggcttggaccatcacatagaagacgagttcaagtag |
43742605 |
T |
|
| Q |
303 |
caagaaatgaaggaaaaagatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccct |
402 |
Q |
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| T |
43742604 |
caagaaatgaaggaaaaagacgttgtcgttttgaaggagcaaaactttaccagtgtaattgaaaagaaccaattccttatggttgagttctatgctccct |
43742505 |
T |
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| Q |
403 |
ggtgtggtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgactt |
476 |
Q |
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| T |
43742504 |
ggtgtggtcactctcaagctctggtgctggagtatgctgcagctgcgactaatgaacattgagttaattgactt |
43742431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 451
Target Start/End: Original strand, 21886064 - 21886197
Alignment:
| Q |
318 |
aaagatgttgtcgttttgaaggagcaaaactttactagtgtaattgaaaagaaccaattccttatggttgagttctatgctccctggtgtggtcactctc |
417 |
Q |
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||||||||||||||||||| |||| |||||| |||| ||||||||||| ||||||||| | |||||||| || |||||||| |||||||| || | || |
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| T |
21886064 |
aaagatgttgtcgttttgattgagcgaaacttcactaccgtaattgaaaacaaccaattcgtgatggttgaattttatgctccgtggtgtggacattgtc |
21886163 |
T |
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| Q |
418 |
aagctctggtgctggagtatgctgcagctgcgac |
451 |
Q |
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| T |
21886164 |
aagctttggcgccagagtatgctgcggcggcgac |
21886197 |
T |
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