View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_high_1 (Length: 552)
Name: NF9303_high_1
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 4307122 - 4307637
Alignment:
| Q |
18 |
gttttatctgtcagacaaccttcaaagcctcttaataagaaaattgccacttattatatctaccatttactcctactaattcaccaactgaaaatcattt |
117 |
Q |
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| T |
4307122 |
gttttatctgtcagacaaccttcaaagcctcttaataagaaaattgccacttattatatctaccatttactcctactaattcaccaactgaaaatcattt |
4307221 |
T |
|
| Q |
118 |
actcttacgtcattcatgctttaggttcgttactctcttatcagtctgcagatcagattgtgaaaatataagattgaatctccatagaatggaaaagaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4307222 |
actcttacgtcattcatgctttaggttcgttactctcttatcagtctgcagatcagattgtgaaaatataagattgaatctctatagaatggaaaagaga |
4307321 |
T |
|
| Q |
218 |
ggaaaattttctatgaacttggaaacaaagcattgaaatgtagagaattctattcacaaatcttagtctttacaattctgagatacacttatttatacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4307322 |
ggaaaattttctatgaacttggaaacaaagcattgaaatgtagagaattctattcacaaatcttagtctttacaatactgagatacacttatttatacta |
4307421 |
T |
|
| Q |
318 |
tgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagttagttagttactagactc |
417 |
Q |
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| T |
4307422 |
tgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaagagttagttagttactagactc |
4307521 |
T |
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| Q |
418 |
tgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaacacagatactcattttctaaactcagaatcatccttcccaactc |
517 |
Q |
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| T |
4307522 |
tgcaattacttgttacacaagtaattgtcttaagctaatatctaatcaaactttaacacagatactcattttctacactcagaatcatcctccccaactc |
4307621 |
T |
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| Q |
518 |
acccaccatctctgat |
533 |
Q |
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| T |
4307622 |
acccaccatctctgat |
4307637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 463
Target Start/End: Original strand, 27031552 - 27031614
Alignment:
| Q |
400 |
tagttagttactagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaat |
463 |
Q |
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| T |
27031552 |
tagttagttactagactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaat |
27031614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 27073356 - 27073291
Alignment:
| Q |
409 |
actagactctgcaattacttgttacacaagcaattgtcttaagctaatatctaatcaaactttaaca |
475 |
Q |
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| T |
27073356 |
actagactgtgcaattacttgttacacaagtaattgtc-taagttaatatctaattacactttaaca |
27073291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 26991641 - 26991687
Alignment:
| Q |
400 |
tagttagttactagactctgcaattacttgttacacaagcaattgtc |
446 |
Q |
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| T |
26991641 |
tagttagttactagactgtgcaattacttgttagacaggtaattgtc |
26991687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 409
Target Start/End: Complemental strand, 33306355 - 33306248
Alignment:
| Q |
302 |
acacttatttatactatgctatgtacctcacaagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagtta |
401 |
Q |
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| T |
33306355 |
acacttatttatactattctaagtacccaacacgcttaactatagttagttatttaactataaccaattattataacatccataactgtcaagacagtta |
33306256 |
T |
|
| Q |
402 |
gttagtta |
409 |
Q |
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|||||||| |
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| T |
33306255 |
gttagtta |
33306248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 30868896 - 30868816
Alignment:
| Q |
176 |
tgtgaaaatataagattgaatctccatagaatggaaaagagaggaaaattttctatgaacttggaaacaaagcattgaaat |
256 |
Q |
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||||||||||||||||||||||||| |||| | ||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
30868896 |
tgtgaaaatataagattgaatctccttagagtagaaaagaaaggaaaatttgctatgaacttggaaacaaagcattgaaat |
30868816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 333 - 408
Target Start/End: Original strand, 18096364 - 18096436
Alignment:
| Q |
333 |
aagcttaactatagttagttgtttaactataactaactattgtaacttccataactgtcaaaacagttagttagtt |
408 |
Q |
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| T |
18096364 |
aagcttaactatagttagttatttaactataactaac---tgtaacttccataacagtcaaaacagttagttagtt |
18096436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 446
Target Start/End: Original strand, 34693899 - 34693945
Alignment:
| Q |
400 |
tagttagttactagactctgcaattacttgttacacaagcaattgtc |
446 |
Q |
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| T |
34693899 |
tagttagttactagactgtgcaattacttgttagacaggtaattgtc |
34693945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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