View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_high_12 (Length: 346)

Name: NF9303_high_12
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_high_12
NF9303_high_12
[»] chr2 (25 HSPs)
chr2 (19-162)||(10463643-10463786)
chr2 (223-331)||(10463847-10463955)
chr2 (21-133)||(10518583-10518702)
chr2 (22-123)||(10545209-10545310)
chr2 (251-331)||(10518819-10518899)
chr2 (248-331)||(10545587-10545670)
chr2 (252-336)||(28102274-28102358)
chr2 (252-331)||(10493377-10493456)
chr2 (244-331)||(10849921-10850008)
chr2 (233-331)||(10507917-10508015)
chr2 (252-336)||(27968461-27968545)
chr2 (252-336)||(28092042-28092126)
chr2 (252-314)||(7481727-7481789)
chr2 (21-86)||(10507409-10507474)
chr2 (252-331)||(7478124-7478203)
chr2 (252-331)||(10489304-10489383)
chr2 (21-85)||(7478672-7478734)
chr2 (33-137)||(10474236-10474347)
chr2 (19-86)||(7476506-7476571)
chr2 (253-331)||(10475073-10475151)
chr2 (19-76)||(10488760-10488815)
chr2 (21-75)||(10507523-10507577)
chr2 (239-329)||(10863406-10863496)
chr2 (21-71)||(9079984-9080036)
chr2 (21-69)||(10848851-10848897)
[»] chr5 (2 HSPs)
chr5 (21-123)||(33602615-33602724)
chr5 (21-76)||(33575332-33575386)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 10463643 - 10463786
Alignment:
Q  19 attgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatgggggagaagtaacagctggttttcgtatatcatgct 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463643 attgcttcctacaaacacaataataacaaaaagaaaattatttacaaaataagatttggaaatgggggagaagtaacagctggttttcgtatatcatgct 10463742  T
Q  119 atatctgaaaatgcatctgctgctatgttgataaaccattagtc 162  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  10463743 atatctgaaaatgcatctgctgctatgttgataaactattagtc 10463786  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 10463847 - 10463955
Alignment:
Q  223 tgcgatgaataaacaagacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463847 tgcgatgaataaacaagacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgt 10463946  T
Q  323 ctgacacag 331  Q
    |||||||||    
T  10463947 ctgacacag 10463955  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 10518583 - 10518702
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaa-------tgggggagaagtaacagctggttttcgtatatc 113  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||       |||||| ||||||||| ||||||||| ||||||    
T  10518583 tgcttcctacacacacaataataacaaaaagaaaataatttacaaaataagatttgaaaatggggggtgggggcgaagtaacaactggttttcatatatc 10518682  T
Q  114 atgctatatctgaaaatgca 133  Q
    |  |||||| ||||||||||    
T  10518683 acactatatttgaaaatgca 10518702  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 10545209 - 10545310
Alignment:
Q  22 gcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatgggggagaagtaacagctggttttcgtatatcatgctata 121  Q
    |||||||||||||||||||| |||||||| |||| ||||||||| ||||||  |||   |||||| ||||||||| |||||||||||||||||  |||||    
T  10545209 gcttcctacaaacacaataataacaaaaataaaactatttacaagataagagatgggggtgggggtgaagtaacaactggttttcgtatatcacactata 10545308  T
Q  122 tc 123  Q
    ||    
T  10545309 tc 10545310  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 10518819 - 10518899
Alignment:
Q  251 cacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||||||| | ||||| || |||||||    
T  10518819 cacacaccttaagatcagcagctgatatgggcttgccaatgcaaaaagcttcagcaagtttaccgtccacctcggacacag 10518899  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 10545587 - 10545670
Alignment:
Q  248 acccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    |||||||||||| ||||||||||||||| ||||||||| | ||||||||||| |||||||||||||| || || ||||| ||||    
T  10545587 acccacacacctcaagatcagctgctgaaatgggcttgtcgctgcaaaaagcttcagcaagtttatcgtctacctctgatacag 10545670  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 28102358 - 28102274
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacaggttct 336  Q
    |||||||| |||||||| |||||||||||||||  ||||||||||||| ||||||||||| || ||||| | |||||||| ||||    
T  28102358 acacacctcaagatcagttgctgatatgggcttatcactgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28102274  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 10493377 - 10493456
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    |||||||| ||||||||||||||| ||||| ||| |||||| |||||| |||||||||||||| ||||| || |||||||    
T  10493377 acacacctcaagatcagctgctgagatgggattgtcactgctaaaagcttcagcaagtttatcgtccacctcggacacag 10493456  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 10849921 - 10850008
Alignment:
Q  244 tgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    |||| ||| ||||||| |||||||| |||||||||||||||| ||| || |||||| |||||||||||||| ||||| || |||||||    
T  10849921 tgttgcccccacacctcaagatcaggtgctgatatgggcttgtcacagcgaaaagcttcagcaagtttatcgtccacctcagacacag 10850008  T

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Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 10507917 - 10508015
Alignment:
Q  233 aaacaagacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||||||||||| |||  |  ||||| |||||||||||||| || || || |||||||    
T  10507917 aaacaagaccttgttactcacacacctcaagatcagctgctgatatgggcttgtcaccaccgaaagcttcagcaagtttatcgtcaacctcggacacag 10508015  T

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Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 336
Target Start/End: Original strand, 27968461 - 27968545
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacaggttct 336  Q
    |||||||| |||||||| |||||||||||||||  | ||||||||||| ||||||||||| || ||||| | |||||||| ||||    
T  27968461 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 27968545  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 28092126 - 28092042
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacaggttct 336  Q
    |||||||| |||||||| |||||||||||||||  | ||||||||||| ||||||||||| || ||||| | |||||||| ||||    
T  28092126 acacacctcaagatcagttgctgatatgggcttatcgctgcaaaaagcttcagcaagtttttcgtccacctttgacacagtttct 28092042  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 7481789 - 7481727
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatc 314  Q
    |||||||| ||||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||    
T  7481789 acacacctcaagatcagcggctgagatgggcttgtcactgctaaaagcttcagcaagtttatc 7481727  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 10507409 - 10507474
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatggggg 86  Q
    ||||||||||| ||||||||| ||||| |||||||| | ||||||| ||||||||| |||||||||    
T  10507409 tgcttcctacacacacaataataacaacaagaaaataacttacaaattaagatttgaaaatggggg 10507474  T

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Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 7478203 - 7478124
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    |||||||| |||||||||| ||||  ||| |||| ||||||||||||| |||||||||||||  ||||| || |||||||    
T  7478203 acacacctcaagatcagctactgagttggacttgtcactgcaaaaagcttcagcaagtttattgtccacctcggacacag 7478124  T

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Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 331
Target Start/End: Original strand, 10489304 - 10489383
Alignment:
Q  252 acacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    ||||||||||||||||||||||||||| |||||| |||     ||||| |||||||||||||| ||||| || |||||||    
T  10489304 acacacctgaagatcagctgctgatataggcttgtcaccattgaaagcttcagcaagtttatcgtccacctcggacacag 10489383  T

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Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 7478734 - 7478672
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatgggg 85  Q
    |||||||||||  |||||||| ||||||||||||| || ||||||||||||||||| | ||||||    
T  7478734 tgcttcctaca--cacaataataacaaaaagaaaactagttacaaaataagatttgaagatgggg 7478672  T

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Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 10474236 - 10474347
Alignment:
Q  33 acacaataagaacaaaaagaaaattatttacaaaataagatttggaaatggg-------ggagaagtaacagctggttttcgtatatcatgctatatctg 125  Q
    ||||||||| ||||||||||||| | ||||||| ||||||| || | |||||       || ||||||||| |||||||||||||||||  ||||||||     
T  10474236 acacaataataacaaaaagaaaactgtttacaagataagatctgtagatgggaggtgggggcgaagtaacaactggttttcgtatatcacactatatcta 10474335  T
Q  126 aaaatgcatctg 137  Q
    ||||| ||||||    
T  10474336 aaaatacatctg 10474347  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 7476571 - 7476506
Alignment:
Q  19 attgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaatggggg 86  Q
    |||||||||||||  |||||||| ||||||||||||| || | ||||||||||||||| | |||||||    
T  7476571 attgcttcctaca--cacaataataacaaaaagaaaactagtgacaaaataagatttgaagatggggg 7476506  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 10475073 - 10475151
Alignment:
Q  253 cacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacacag 331  Q
    ||||||| ||||||||||||||| ||||||||| |||  |  ||||| || ||||||||||| ||||| || |||||||    
T  10475073 cacacctcaagatcagctgctgagatgggcttgtcaccactgaaagcttctgcaagtttatcgtccacctcggacacag 10475151  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 10488760 - 10488815
Alignment:
Q  19 attgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttg 76  Q
    |||||||||||||  |||||||| |||| |||||||| || |||||||||||||||||    
T  10488760 attgcttcctaca--cacaataataacagaaagaaaactagttacaaaataagatttg 10488815  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 10507523 - 10507577
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagattt 75  Q
    ||||||||||| | ||||||| ||||||||||||  ||| |||||||||||||||    
T  10507523 tgcttcctacacatacaataataacaaaaagaaacctatatacaaaataagattt 10507577  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 10863406 - 10863496
Alignment:
Q  239 gacactgttacccacacacctgaagatcagctgctgatatgggcttgccactgcaaaaagcctcagcaagtttatcatccacgtctgacac 329  Q
    |||||| || ||| ||||||| ||| |||||| |||||||  |  || ||||| ||| ||| |||||||||||||||||||| ||||||||    
T  10863406 gacactattgccctcacacctcaagttcagctcctgatataagtctgtcactggaaagagcttcagcaagtttatcatccacctctgacac 10863496  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 9080036 - 9079984
Alignment:
Q  21 tgcttcctacaaacacaa--taagaacaaaaagaaaattatttacaaaataag 71  Q
    ||||||||||| ||||||  ||| ||||||||||||| |||||||||||||||    
T  9080036 tgcttcctacacacacaaaataataacaaaaagaaaactatttacaaaataag 9079984  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 10848851 - 10848897
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaata 69  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||||||    
T  10848851 tgcttcctaca--cacaataataacaaaaagaaaattattttcaaaata 10848897  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 33602615 - 33602724
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttggaaa-------tgggggagaagtaacagctggttttcgtatatc 113  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| | |       |||||| ||||||||| ||||||||| ||||||    
T  33602615 tgcttcctacacacacaataataacaaaaagaaaactatttacaagataagatttgtagatggcgggtgggggcgaagtaacaactggttttcatatatc 33602714  T
Q  114 atgctatatc 123  Q
    || |||||||    
T  33602715 atactatatc 33602724  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 33575386 - 33575332
Alignment:
Q  21 tgcttcctacaaacacaataagaacaaaaagaaaattatttacaaaataagatttg 76  Q
    ||||||||||| ||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  33575386 tgcttcctacacacacaataataac-aaaagaaaactatttacaagataagatttg 33575332  T

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