View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_high_18 (Length: 321)
Name: NF9303_high_18
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 45605239 - 45604939
Alignment:
| Q |
18 |
atggcggccaacaacgtcgtaatagaagagactgacaatgttggagttttacttcaattaaactgttttaaaagtaa----tagtgatgtggtagaatat |
113 |
Q |
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| T |
45605239 |
atggcggccaacaacgtcgtaatagaagagaccgacaatgttggagttttacttcaattaaactgttttaaaattaagtgatagtgatgtggcagaatat |
45605140 |
T |
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| Q |
114 |
tattggtcgactgtaatatagttttacat-----gtgcaccataattaaactctttaaaaatatattttataaccaaaaatttaacttcatattttactc |
208 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45605139 |
tattggtcgactgtaatatagttttatatcgtcggtgcaccataattaaactctttaaaaatatattttataaccaaaaatttagcttcatattttactg |
45605040 |
T |
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| Q |
209 |
aaataactttttatacattaaatatatatttcacaccaaaaaattcaacttacaaatttctcatgtggctaaatgttatttgttgttggatacactacct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45605039 |
aaataactttttatacattaaatatatatttcacaccaaaaaattcaacttacaaatttctcatgtggctaaatgttatttgttgttggatacactacct |
45604940 |
T |
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| Q |
309 |
a |
309 |
Q |
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| T |
45604939 |
a |
45604939 |
T |
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