View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_high_3 (Length: 499)
Name: NF9303_high_3
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 262 - 486
Target Start/End: Complemental strand, 13266225 - 13266001
Alignment:
| Q |
262 |
aattcagacgaagaggtgaaagatgagcttgttccaactagtgaaatggaatcaagcaacttcagccttcatcaacttttcgcttcaggtaaagtttaaa |
361 |
Q |
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| T |
13266225 |
aattcagacgaggaagtgaaagatgagattgttccaactagtgaaatggaatcaagcaacttcagccttcatcaactttttgcttcaggtaaagtttaaa |
13266126 |
T |
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| Q |
362 |
ttttgagtaaggaaatgcattttaatttttattcaatacgtgttttatatcgaagtcgtggtcacaattgcattgccccggctactttatgaaaatattt |
461 |
Q |
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| T |
13266125 |
ttttgagtaagcaaatgcatttgaatttttattcaacaaatgttttaaatcgaagtcgtggtcgcaattgcattgtcccggttactttgtgaaaatattt |
13266026 |
T |
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| Q |
462 |
catttccattttattacattgatgt |
486 |
Q |
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| T |
13266025 |
aatttccattttattacatttatgt |
13266001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 13271469 - 13271391
Alignment:
| Q |
48 |
ttttttgaacatttcttccacacatcaacttacttgttatcttttacaccttgacataaacaatgctataattgatttt |
126 |
Q |
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|||||| |||||||||| || ||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
13271469 |
tttttttaacatttcttttacgcatgattttacttgttatcttttacaccttgacataaacaatcctatagttgatttt |
13271391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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