View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_high_30 (Length: 244)
Name: NF9303_high_30
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 35558257 - 35558064
Alignment:
| Q |
43 |
catttctactagacccaacacatgttgatggattnnnnnnngtttgaatatataatataaatttatagtgaatttggtttcaagtaannnnnnnnatggt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
35558257 |
catttctactagacccaacacatgttgatggattaaaaaaagtttgaatatataatataaaattatagtgaatttggtttcaagtaattttttt-atggt |
35558159 |
T |
|
| Q |
143 |
gtagttctcaagtgattattagctgtttagctaattcttaaatatcgtaatatggttttttagtgaatttatactctagttgatttcctttgcta |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |
|
|
| T |
35558158 |
gtagttctcaagtgattattagctgtttagctaattcttaaatatcgtaatatggttttttggtgaatttatacactaattgatttcctttgcta |
35558064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 35554033 - 35553945
Alignment:
| Q |
146 |
gttctcaagtgattattagctgtttagctaattcttaaatatcgtaatatggttttttagtgaatttatactctagttgatttcctttg |
234 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| ||| |||| || ||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
35554033 |
gttctcaagtgattattagttgtttaactaattattacatattttattatggttttttggtgaataaatactctagttgatttcctttg |
35553945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 35552062 - 35551974
Alignment:
| Q |
146 |
gttctcaagtgattattagctgtttagctaattcttaaatatcgtaatatggttttttagtgaatttatactctagttgatttcctttg |
234 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| ||| |||| || ||||| ||||| |||||| |||| |||||||||||||||||| |
|
|
| T |
35552062 |
gttctcaagtgattattagttgtttaactaattattacatattttattatggctttttggtgaatatatattctagttgatttcctttg |
35551974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University