View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_high_34 (Length: 241)
Name: NF9303_high_34
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 45275323 - 45275112
Alignment:
| Q |
12 |
ttcgtgttccagtgaggtctcttcatcagaagaacgatgcagcgatatatatactgatttttagttacattccttttatctgcaaagttaattgtttacg |
111 |
Q |
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| T |
45275323 |
ttcgagttccagtgaggtctcttcatcagaagaacgatgcagcgatatatatactgatttttagttacattccttttatctgcaaagttaattgtttatg |
45275224 |
T |
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| Q |
112 |
tctattgaggaaaatggatcacatgcttgagaattgttactctgatttgctcctataaagaagttattggaatgcctcgcaagaggatccactccatact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275223 |
tctattgaggaaaatggatcacatgcttgagaattgttactctgatttgctcctataaagaagttattggaatgcctcgcaagaggatccactccatact |
45275124 |
T |
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| Q |
212 |
tgttccatatac |
223 |
Q |
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| T |
45275123 |
tattccatatac |
45275112 |
T |
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