View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_high_9 (Length: 360)
Name: NF9303_high_9
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 81 - 354
Target Start/End: Complemental strand, 2929457 - 2929184
Alignment:
| Q |
81 |
cattatgcattggagtatacaggtacccctatctctaacctctttttatttgaagttttgtctttgatctggactacattgtgttttagattttccttgt |
180 |
Q |
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| T |
2929457 |
cattatgcattggagtatacaggtacccctatctctaacctctttttatttgaagttttctctctgatctggactacattgtgttttagattttccttgt |
2929358 |
T |
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| Q |
181 |
gatgttctttatgataaagtacaaatgtatatgtggaaaactacaacattattccaaagaaatcatgaaaatgaaggatgttaacccaaattatgtcata |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2929357 |
gatgttctttatgataaagtacaaatgtatatgtggaaaactacaacattattccaaagaaatcatgaaaatgaagaatgttaacccaaattatgtcata |
2929258 |
T |
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| Q |
281 |
aatttattttgtagttattgtaaatataatttcaaaaacaatatatccttctttgatgctttgacaacaccaaa |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2929257 |
aatttattttgtagttattgtaaatataatttcaaaaacaatatatccttctttgatgctttgacaataccaaa |
2929184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 81 - 344
Target Start/End: Complemental strand, 2937751 - 2937488
Alignment:
| Q |
81 |
cattatgcattggagtatacaggtacccctatctctaacctctttttatttgaagttttgtctttgatctggactacattgtgttttagattttccttgt |
180 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
2937751 |
cattatgcattggagtatacaagtacccctatctctaacctctttttatttgaagttttgtctctgatctggactacattgtgtattagattttccttgt |
2937652 |
T |
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| Q |
181 |
gatgttctttatgataaagtacaaatgtatatgtggaaaactacaacattattccaaagaaatcatgaaaatgaaggatgttaacccaaattatgtcata |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2937651 |
gatgttctttatgataaagtacaaatgtatatgtggaaaactacaacattattccaaagaaatcatgaaaatgaaggatgttaacccaaattatgtcata |
2937552 |
T |
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| Q |
281 |
aatttattttgtagttattgtaaatataatttcaaaaacaatatatccttctttgatgctttga |
344 |
Q |
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||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
2937551 |
aatttattttgtagttaatataaatacaatttataaaacaatatatccttctttgatactttga |
2937488 |
T |
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