View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_1 (Length: 711)
Name: NF9303_low_1
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 4519965 - 4520345
Alignment:
| Q |
1 |
aagtgtaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaaaattgaaaatagagaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4519965 |
aagtctaacattaacaatactaaaaagtttaccaacatgttccagcgtcatttcatgcaagaatcagtccaaacagtgtagaaaaattgaaaatagagaa |
4520064 |
T |
|
| Q |
101 |
ggtaacagcaagaaaatagcataagcaatgttacctttttgctacttttgagtgctaaatttgtgacagaaatcatgaaaattaaccgatgttatactta |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4520065 |
ggtaacagcaagaaaatagcataagcaatgtttcatttttgctacttttgagtgctaaacttgtgacagaaatcatgaaaattaaccgatgttatactta |
4520164 |
T |
|
| Q |
201 |
tctcacacagacatatggatacattctaagtagtttaatattcagtgtctgtctcaaacagtagcagacaccacaactattcttgaattttccattataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
4520165 |
tctcacacagacatatggatacattctaagtagtttaatattcagtgtctgtctcaaacagtagcagacaccacaactgttcttgaactttccattataa |
4520264 |
T |
|
| Q |
301 |
ttgttttaaggatcgttgaatgattctaaaacataaatgaatttatcacaaacaaagtaaacacttcctataaatttgttt |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520265 |
ttgttttaaggatcgttgaatgattctaaaacataaatgaatttatcacaaacaaagtaaacacttcctataaatttgttt |
4520345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 380 - 697
Target Start/End: Original strand, 4520377 - 4520694
Alignment:
| Q |
380 |
ttttcaagacatcaacacagataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
479 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520377 |
ttttcaagacatcaacacaaataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
4520476 |
T |
|
| Q |
480 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatnnnnnnn |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4520477 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatccccccg |
4520576 |
T |
|
| Q |
580 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaattgaagaaattaaa |
679 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4520577 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaactgaagaaattaaa |
4520676 |
T |
|
| Q |
680 |
agtctccttctccctttg |
697 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
4520677 |
agtctccttcttcctttg |
4520694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 243 - 381
Target Start/End: Original strand, 8152424 - 8152567
Alignment:
| Q |
243 |
cagtgtctgtctcaaacagtagcagacaccacaactattcttgaattttccattataattgttttaaggatcgttgaatgattctaaaacataaatgaat |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||| ||||||| |||||||||| |||| |
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| T |
8152424 |
cagtgtctgtctcaaacagtagcagacaccacaactgttcttgaactttccattataactgtttcaatgatcgttcaatgattttaaaacataagtgaac |
8152523 |
T |
|
| Q |
343 |
ttatcacaaacaaagta-----aacacttcctataaatttgttt |
381 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||| |
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| T |
8152524 |
ttatcacaaacaaagtataaagaacacttcgtataaatttgttt |
8152567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 8152599 - 8152635
Alignment:
| Q |
380 |
ttttcaagacatcaacacagataaaaagatacttaca |
416 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
8152599 |
ttttcaagacatcaacacaaataaaaagatacttaca |
8152635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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