View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_10 (Length: 534)
Name: NF9303_low_10
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 42798435 - 42798249
Alignment:
| Q |
18 |
ataactacattaactacaatgttgacaaagtagtaacatgttccaatattaatatgtgattctatcatgtctgctaaattttaatctgtgattcatacaa |
117 |
Q |
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| T |
42798435 |
ataactacattaactacaatgttgacaaagtagtaacatcttccaatattaatatgtgattctatcatgtctgctaaattttaatctgtgattcatacaa |
42798336 |
T |
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| Q |
118 |
gcttcccaaatataagctatttctacacagaatcgacaaaagagagcattcatacaaatcaaatagaaattggatcagttttaagatat |
206 |
Q |
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| T |
42798335 |
gcttcccaaatataagctatttctacacagaatcgacaaa--agagcattcatacaaattaaatagaaattggatcagttttaagatat |
42798249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 326 - 530
Target Start/End: Complemental strand, 42797791 - 42797600
Alignment:
| Q |
326 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
425 |
Q |
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| T |
42797791 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
42797692 |
T |
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| Q |
426 |
cttccaaagaagtttttgatagttcaatatccttgttcaattttaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgcttct |
525 |
Q |
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| T |
42797691 |
cttccaaagaagtttttgatagtt-------------caattctaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgtttct |
42797605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 42798208 - 42798152
Alignment:
| Q |
276 |
gcacaactcatattatcaaacggtttcttgatttagcatatagttgataataattat |
332 |
Q |
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| T |
42798208 |
gcacaactcatattatcaaatggtttcttgatttagcatatagttgataataattat |
42798152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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