View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_100 (Length: 248)
Name: NF9303_low_100
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 31555415 - 31555638
Alignment:
| Q |
19 |
acatggaatgtttaacatcattctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggt |
118 |
Q |
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| T |
31555415 |
acatggaatgtttaacatcattctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggt |
31555514 |
T |
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| Q |
119 |
gtacatttgtgcttggtttgctatatagtatattccccatgaaacatattaaaattctccttccttctcaaacagactgaggtgtacatctgtccttggc |
218 |
Q |
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| T |
31555515 |
gtacatttgtgcttggtttgctatatagtatattccccatgaaacatattaaaattctccttccttctcaaacagactgaggtgtacatctgtccttggc |
31555614 |
T |
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| Q |
219 |
tatcccttacaaatcctatgcttc |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
31555615 |
tatcccttacaaatcctatgcttc |
31555638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 31558499 - 31558588
Alignment:
| Q |
19 |
acatggaatgtttaacatcattctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaaca |
109 |
Q |
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| T |
31558499 |
acatggaatgtttaacatcattctagatttcttccatatctgaaagctagaaga-ttaaacattcattgaagctttccttccacagaaaca |
31558588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 31878049 - 31877923
Alignment:
| Q |
24 |
gaatgtttaacatcattctagatttcttccatatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaaggtgtaca |
123 |
Q |
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| T |
31878049 |
gaatgtttaacatcattttatattacttcaatatctgaaagctaaaatatt-aaacattttttgaagctttccttccacagaaacagaccaaggtgtaca |
31877951 |
T |
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| Q |
124 |
tttgtgcttggtttgctatatagtatat |
151 |
Q |
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| T |
31877950 |
tctgtgattggcttacgatatactatat |
31877923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 10542262 - 10542168
Alignment:
| Q |
22 |
tggaatgtttaacatcattctagatttcttc-catatctgaaagctagaagatttaaacatttgttgaagctttccttccacagaaacaggccaag |
116 |
Q |
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| T |
10542262 |
tggaatgttcaaaatcattttagatttcttcaaatatctcaaagttagaaga-ttaaacattccttgaagctttgcttccaaagaaagagaccaag |
10542168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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