View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_114 (Length: 240)

Name: NF9303_low_114
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_114
NF9303_low_114
[»] chr3 (8 HSPs)
chr3 (43-227)||(32417131-32417303)
chr3 (48-139)||(1613912-1614001)
chr3 (43-147)||(29359213-29359314)
chr3 (54-123)||(4525197-4525265)
chr3 (44-147)||(45953912-45954013)
chr3 (44-92)||(11194786-11194834)
chr3 (43-123)||(34785090-34785169)
chr3 (49-89)||(45954105-45954145)
[»] chr1 (8 HSPs)
chr1 (43-146)||(46510624-46510726)
chr1 (50-123)||(23175834-23175906)
chr1 (43-152)||(28215941-28216045)
chr1 (44-146)||(15608861-15608961)
chr1 (54-148)||(43741118-43741210)
chr1 (43-123)||(28750073-28750152)
chr1 (43-142)||(31730522-31730619)
chr1 (54-148)||(2730384-2730476)
[»] chr8 (13 HSPs)
chr8 (43-147)||(28237285-28237387)
chr8 (48-126)||(33744393-33744470)
chr8 (50-146)||(35065511-35065605)
chr8 (43-125)||(10167689-10167770)
chr8 (43-125)||(10675544-10675625)
chr8 (54-92)||(33970650-33970688)
chr8 (43-152)||(17075310-17075417)
chr8 (43-152)||(17572853-17572960)
chr8 (44-121)||(32222677-32222753)
chr8 (48-147)||(290552-290647)
chr8 (44-152)||(4718164-4718270)
chr8 (50-148)||(10579027-10579123)
chr8 (49-89)||(33744259-33744299)
[»] chr6 (15 HSPs)
chr6 (43-147)||(31842455-31842557)
chr6 (43-144)||(4058859-4058958)
chr6 (49-123)||(10117895-10117968)
chr6 (44-144)||(7466452-7466551)
chr6 (44-151)||(29681594-29681699)
chr6 (43-89)||(6153799-6153845)
chr6 (43-145)||(6366625-6366725)
chr6 (43-125)||(9242396-9242477)
chr6 (49-147)||(34556551-34556646)
chr6 (49-86)||(13685536-13685573)
chr6 (44-89)||(32132033-32132078)
chr6 (49-125)||(5385471-5385546)
chr6 (49-89)||(7466384-7466424)
chr6 (50-146)||(15837589-15837684)
chr6 (44-92)||(32462170-32462218)
[»] chr4 (12 HSPs)
chr4 (49-149)||(26629429-26629527)
chr4 (44-146)||(33181509-33181609)
chr4 (44-145)||(33230382-33230481)
chr4 (44-149)||(2717296-2717399)
chr4 (44-152)||(8459529-8459635)
chr4 (43-147)||(48148762-48148864)
chr4 (50-146)||(54682920-54683014)
chr4 (43-125)||(23256976-23257057)
chr4 (43-125)||(27704688-27704769)
chr4 (54-144)||(37133412-37133500)
chr4 (49-89)||(32319550-32319590)
chr4 (50-146)||(44258698-44258792)
[»] chr7 (10 HSPs)
chr7 (44-143)||(43359523-43359620)
chr7 (43-144)||(40934443-40934542)
chr7 (44-148)||(40081845-40081947)
chr7 (43-92)||(8238685-8238734)
chr7 (49-146)||(41506505-41506600)
chr7 (49-147)||(29368836-29368931)
chr7 (49-146)||(25513550-25513645)
chr7 (43-152)||(37220349-37220456)
chr7 (43-84)||(38444464-38444505)
chr7 (43-92)||(47764610-47764659)
[»] chr5 (5 HSPs)
chr5 (54-123)||(3308611-3308679)
chr5 (44-146)||(34578300-34578399)
chr5 (43-143)||(10737796-10737894)
chr5 (44-92)||(28770625-28770673)
chr5 (49-89)||(36486767-36486807)
[»] scaffold0223 (1 HSPs)
scaffold0223 (49-125)||(28126-28201)
[»] chr2 (9 HSPs)
chr2 (44-148)||(38556245-38556347)
chr2 (43-125)||(11723571-11723653)
chr2 (50-89)||(39134521-39134560)
chr2 (49-147)||(6334105-6334201)
chr2 (76-146)||(43927758-43927826)
chr2 (54-159)||(12262721-12262824)
chr2 (49-89)||(8846919-8846959)
chr2 (50-86)||(16101278-16101314)
chr2 (43-143)||(25903573-25903671)
[»] scaffold0045 (1 HSPs)
scaffold0045 (49-89)||(22162-22202)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 32417131 - 32417303
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  32417131 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaaatatttatagggatcat-ttacttaattaa 32417229  T
Q  143 ccctataattgatttatatagaataattacctcatgcataaacacttatatataagcatttatactataagcacttacctatgct 227  Q
    ||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32417230 ccctataattgattta-----------tacctcatgcataaacacttatatataagcatttatactataagcacttacctatgct 32417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 1613912 - 1614001
Alignment:
Q  48 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaat 139  Q
    ||||||||||||||| ||||||| |||||||||||||||  |||||| | ||||| ||||||||| ||||||||||||| || |||||||||    
T  1613912 tgaaaattttacaggtactaaaaagtgcgattttatttt-gaagggactaaaaataaaattctaaatatttatagggatcat-ttacttaat 1614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 147
Target Start/End: Original strand, 29359213 - 29359314
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||  || ||||| ||||||| | |||||||||||   || ||||||||||||    
T  29359213 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg--attaaaataaaattctgaatatttatagggtccat-ttacttaattaa 29359309  T
Q  143 cccta 147  Q
    |||||    
T  29359310 cccta 29359314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 4525197 - 4525265
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 123  Q
    ||||||| ||||||||| ||||||||||||||| ||| ||| | ||||||||||||||  ||||||||||    
T  4525197 ttttacaaggactaaaaagtgcgattttattttgtaa-ggactaaaaatgaaattctagatatttatagg 4525265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 45954013 - 45953912
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| | ||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | |||||| |||||  || |||||||||||||    
T  45954013 tgatggaaaattttataaggactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaatatttacagggaccat-ttacttaattaac 45953916  T
Q  144 ccta 147  Q
    ||||    
T  45953915 ccta 45953912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 11194786 - 11194834
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 92  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  11194786 tgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 11194834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 34785090 - 34785169
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 123  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||    
T  34785090 ttgatggaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagg 34785169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 45954105 - 45954145
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  45954105 gaaaatttcacagggactaaaaagtgtgattttattttata 45954145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 46510624 - 46510726
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||||||||||||||| |||||||||||||||   ||||| | ||||  ||||||| | ||||||||||||  || ||||||||||||    
T  46510624 ttgatggaaaattttacagggactaaaaagtgcgattttatttttgtagggactaaaaacaaaattctgaatatttatagggaccat-ttacttaattaa 46510722  T
Q  143 ccct 146  Q
    ||||    
T  46510723 ccct 46510726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 23175834 - 23175906
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 123  Q
    ||||||||||||||||||||| || |||||||||||||| ||||| | ||||| ||||||||| |||| |||||    
T  23175834 aaaattttacagggactaaaaagtacgattttattttat-agggactaaaaataaaattctaaatattaatagg 23175906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 28215941 - 28216045
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| || |||||||| ||| || |||||||| || |||| | ||||   |||||||| ||||||||||||| || ||||||||||||    
T  28215941 ttgatggaaaattttatagagactaaaaagtgtgactttattttgta-gggactaaaaa---aattctaaatatttatagggattat-ttacttaattaa 28216035  T
Q  143 ccctataatt 152  Q
    ||||||||||    
T  28216036 ccctataatt 28216045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 15608861 - 15608961
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | |||||| |||||  || |||||||||||||    
T  15608861 tgatagaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttacagggaccat-ttacttaattaac 15608958  T
Q  144 cct 146  Q
    |||    
T  15608959 cct 15608961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 43741210 - 43741118
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 148  Q
    ||||||||||||||||| ||| |||||||||||||||   ||| ||||| ||||||| | |||||||| |||  || ||||||||||||||||||    
T  43741210 ttttacagggactaaaaagtgtgattttattttataa-ataataaaaataaaattctgaatatttataaggaccat-ttacttaattaaccctat 43741118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 28750152 - 28750073
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 123  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| ||| ||| | ||||  ||||||| ||||||||||||    
T  28750152 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaa-ggattaaaaacaaaattctgattatttatagg 28750073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 31730619 - 31730522
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||    
T  31730619 ttgatggaaaattttatagggactaaaaattgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaa 31730522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 2730384 - 2730476
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 148  Q
    ||||| ||| ||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | |||||||| |||| || ||||||||||||||||||    
T  2730384 ttttataggaactaaaaagtgtgattttattttgtaa-ggattaaaaataaaattctgaatatttataaggatgat-ttacttaattaaccctat 2730476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 28237387 - 28237285
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||    
T  28237387 ttgatggaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaa 28237290  T
Q  143 cccta 147  Q
    |||||    
T  28237289 cccta 28237285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 33744393 - 33744470
Alignment:
Q  48 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggat 126  Q
    ||||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | |||||||||||||    
T  33744393 tgaaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggat 33744470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 35065605 - 35065511
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    ||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||  || ||||||||||||||||    
T  35065605 aaaattttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctgaatatttatagggactat-ttacttaattaaccct 35065511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 10167689 - 10167770
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  10167689 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 10167770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 10675544 - 10675625
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    ||||| |||||||||| ||| ||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | ||||||||||||    
T  10675544 ttgatggaaaattttataggaactaaaaagtgtgattttattttgtaa-ggactaaaaataaaattctgaatatttataggga 10675625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 33970688 - 33970650
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagg 92  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  33970688 ttttacaaggactaaaaagtgcgattttattttataagg 33970650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 17075417 - 17075310
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| ||||||||||||  || ||||| ||| ||||||||||| | ||||| | ||||| ||||| | | ||||||||| ||| || ||||||||||||    
T  17075417 ttgatagaaaattttacaaagaataaaaggtgtgattttattttgt-agggactaaaaataaaattttgaatatttatagagatcat-ttacttaattaa 17075320  T
Q  143 ccctataatt 152  Q
    |||| |||||    
T  17075319 ccctttaatt 17075310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 17572853 - 17572960
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| ||||||||||||  || ||||| ||| ||||||||||| | ||||| | ||||| ||||| | | ||||||||| ||| || ||||||||||||    
T  17572853 ttgatagaaaattttacaaagaataaaaggtgtgattttattttgt-agggactaaaaataaaattttgaatatttatagagatcat-ttacttaattaa 17572950  T
Q  143 ccctataatt 152  Q
    |||| |||||    
T  17572951 ccctttaatt 17572960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 32222753 - 32222677
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttata 121  Q
    |||| |||||||||||| |||||||||  |||||||||||||||  || |||| |||| |||||||| | ||||||||    
T  32222753 tgatggaaaattttacaaggactaaaaaatgcgattttatttta-cagagaataaaaacgaaattctgaatatttata 32222677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 290552 - 290647
Alignment:
Q  48 tgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 147  Q
    |||||| |||| ||||||||||| ||| ||||||||||||| |||||  |||||  ||||| | | ||||||||||||  || |||||||||||||||||    
T  290552 tgaaaaatttatagggactaaaaagtgtgattttattttat-aggga--caaaaaaaaattatgaatatttatagggaccat-ttacttaattaacccta 290647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 4718164 - 4718270
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| ||| ||||||| ||| ||||||||||| | ||||| | ||||  ||||| | | ||||||||||||  || |||||||||||||    
T  4718164 tgatggaaaattttataggaactaaaaagtgtgattttattttgt-agggactaaaaacaaaattatgaatatttatagggaccat-ttacttaattaac 4718261  T
Q  144 cctataatt 152  Q
    |||| ||||    
T  4718262 cctaaaatt 4718270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 10579123 - 10579027
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga-taatattacttaattaaccctat 148  Q
    ||||||||| ||||| ||||| ||| ||||||||||| | ||||| | ||||  ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  10579123 aaaattttatagggattaaaaagtgtgattttattttgt-agggactaaaaacaaaattctaaatatttatagggactaaaa--acttaattaaccctat 10579027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 33744299 - 33744259
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  33744299 gaaaatgtcacagggactaaaatgtgtgattttattttata 33744259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 31842557 - 31842455
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||| | ||||| | ||||  ||||||||| |||||||| ||| ||| |||||| |||||    
T  31842557 ttgatagaaaattttatagggactaaaaagtgcgattttattttgt-agggactaaaaacaaaattctaaatatttataaggacaat-ttactttattaa 31842460  T
Q  143 cccta 147  Q
    |||||    
T  31842459 cccta 31842455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 4058958 - 4058859
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | ||||| ||||||||| ||||||||| ||  || ||||||||||||    
T  4058958 ttgatggaaaattttaaagggactaaaaagtgtgattttattttgt-agggactaaaaataaaattctaaatatttatagagaccat-ttacttaattaa 4058861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 10117968 - 10117895
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 123  Q
    |||||||||||| ||||||||| ||||||||||||||||||  ||  | ||||||||||| ||| ||||||||||    
T  10117968 gaaaattttacaaggactaaaaagtgcgattttattttatagaggt-taaaaatgaaattttaaatatttatagg 10117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 7466452 - 7466551
Alignment:
Q  44 tgattgaaaatttt-acagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    |||||||||||||| | ||||||||||| ||| ||||||||||||||| ||| | ||||  ||||||||| |||||||| |||  || ||||||||||||    
T  7466452 tgattgaaaatttttatagggactaaaaagtgtgattttattttataa-ggactaaaaacaaaattctaaatatttataaggaccat-ttacttaattaa 7466549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 29681699 - 29681594
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| | ||||||||| |||  |||||||||||| ||||| | ||||  ||||||| | |||||| |||||  || |||||||||||||    
T  29681699 tgatggaaaattttataaggactaaaaagtgtaattttattttat-agggactaaaaacaaaattctgaatatttacagggaccat-ttacttaattaac 29681602  T
Q  144 cctataat 151  Q
    ||||||||    
T  29681601 cctataat 29681594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 6153845 - 6153799
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||||    
T  6153845 ttgatggaaaattttataaggactaaaaagtgcgattttattttata 6153799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 6366625 - 6366725
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||| ||||| || |||||||| ||| ||||||||||| | ||||| | ||||| ||||||| | ||||||||||||  || ||||||||||||    
T  6366625 ttgatggaaatttttatagagactaaaaagtgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggaccat-ttacttaattaa 6366722  T
Q  143 ccc 145  Q
    |||    
T  6366723 ccc 6366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 9242477 - 9242396
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    ||||| |||||| ||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  9242477 ttgatggaaaatgttatagggactaaaaagtgtgattttattttgt-agggactaaaaacaaaattctaaatatttataggga 9242396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 34556551 - 34556646
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 147  Q
    |||||| | ||||||||||||| ||| ||||||||||| || |||| | ||||| ||||||| | ||||||||||||  || |||||||||||||||||    
T  34556551 gaaaatgtcacagggactaaaa-gtgtgattttattttgta-gggactaaaaataaaattcttaatatttatagggaccat-ttacttaattaacccta 34556646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 13685573 - 13685536
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttatttt 86  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  13685573 gaaaattttacagggactaaaaagtgtgattttatttt 13685536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 32132078 - 32132033
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||    
T  32132078 tgatggaaaattttacagagactaaatagtgcgattttattttata 32132033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 5385471 - 5385546
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    |||||||||| | ||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | ||||||||||||    
T  5385471 gaaaattttataaggactaaaaagtgtgattttattttat-agggattaaaaacaaaattctgaatatttataggga 5385546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 7466424 - 7466384
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  7466424 gaaaatgttacagggactaaaaagtgtgattttattttata 7466384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 15837589 - 15837684
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    ||||||||| ||||||||||| ||| |||||||||||   ||||| | ||||  | ||||||| |||||||||||| |   ||||||||||||||||    
T  15837589 aaaattttatagggactaaaaagtgtgattttatttttctagggactaaaaacaacattctaaatatttataggga-aggtttacttaattaaccct 15837684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 32462218 - 32462170
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 92  Q
    |||| ||| |||||| ||||||||||||||| ||||||||||| |||||    
T  32462218 tgatggaacattttatagggactaaaatgtgtgattttattttgtaagg 32462170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 26629527 - 26629429
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctat 148  Q
    |||||||| ||||||||||||| ||| ||||||||||| | ||||| | ||||||||||| | | ||||||||||||  || ||||||||||||||||||    
T  26629527 gaaaatttcacagggactaaaaagtgtgattttattttgt-agggactaaaaatgaaattttgaatatttatagggaccat-ttacttaattaaccctat 26629430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 33181609 - 33181509
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | || |||||||||| | ||||||||||||| || |||||||||| ||    
T  33181609 tgatggaaaattttatagggactaaaaagtgtgattttatttt-ttagggattaaatatgaaattctgaatatttatagggatcat-ttacttaattgac 33181512  T
Q  144 cct 146  Q
    |||    
T  33181511 cct 33181509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 145
Target Start/End: Original strand, 33230382 - 33230481
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| | ||||| | || |||||||||| | ||||||||||||| || |||||||||| ||    
T  33230382 tgatggaaaattttatagggactaaaaagtgtgattttatttt-ttagggattaaatatgaaattctgaatatttatagggatcat-ttacttaattgac 33230479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 2717296 - 2717399
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| | ||||||||| || |||| |||||||||| || | | ||||||||||| ||| ||||||||||||  || |||||||||||||    
T  2717296 tgatggaaaattttataaggactaaaaagtacgatattattttata-ggaattaaaaatgaaattataaatatttatagggactat-ttacttaattaac 2717393  T
Q  144 cctata 149  Q
    | ||||    
T  2717394 catata 2717399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 8459529 - 8459635
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||| ||| ||||||||||| ||| ||||||||||| | ||||| | ||||  ||||||| | ||||||||||||  || |||||||||||||    
T  8459529 tgatggaaaatcttatagggactaaaaagtgtgattttattttgt-agggattaaaaacaaaattctgaatatttatagggaccat-ttacttaattaac 8459626  T
Q  144 cctataatt 152  Q
    |||| ||||    
T  8459627 cctaaaatt 8459635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 48148864 - 48148762
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||  ||||| | | |||||||||||| ||| ||||||||||||    
T  48148864 ttgatggaaaattttatagggactaaaaactgtgattttattttgt-agggactaaaaacaaaattatgaatatttatagggacaat-ttacttaattaa 48148767  T
Q  143 cccta 147  Q
    |||||    
T  48148766 cccta 48148762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 54683014 - 54682920
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    ||||||||| ||||||||||| |||  ||||||||||||  |||| | ||||  ||||||| | |||||||||||| ||| ||||||||||||||||    
T  54683014 aaaattttatagggactaaaaagtgtaattttattttat-tgggactaaaaactaaattctgaatatttatagggacaat-ttacttaattaaccct 54682920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 23257057 - 23256976
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  23257057 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 23256976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 27704688 - 27704769
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    ||||| |||||||||| | ||||||||| ||| ||||||||||| | ||||| | ||||  ||||||||| ||||||||||||    
T  27704688 ttgatggaaaattttataaggactaaaaagtgtgattttatttt-ttagggactaaaaacaaaattctaaatatttataggga 27704769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 37133412 - 37133500
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacc 144  Q
    ||||| || |||||||| ||| ||||||||||| || |||||| ||||  ||||||||| ||||||||||||  || ||||||||||||||    
T  37133412 ttttatagagactaaaaagtgtgattttattttgta-gggaataaaaacaaaattctaaatatttatagggaccat-ttacttaattaacc 37133500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 32319590 - 32319550
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  32319590 gaaaattttatagggactaaaaagtgtgattttattttata 32319550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 44258792 - 44258698
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    ||||||||| ||| ||| ||| ||| ||||||||||| || |||| | ||||  ||||||||| ||||||||||||  || ||||||||||||||||    
T  44258792 aaaattttataggcacttaaaagtgtgattttattttgta-gggattaaaaacaaaattctaaatatttatagggaccat-ttacttaattaaccct 44258698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 43359620 - 43359523
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| ||||||| |||| | ||||||||||||||||||||||| ||| ||| | ||||||||||||||| ||||||||| ||  || |||||||||||||    
T  43359620 tgatggaaaattatacatgaactaaaatgtgcgattttattttgtaa-ggactgaaaatgaaattctaaatatttatagcgaccat-ttacttaattaac 43359523  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 40934542 - 40934443
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||||| ||||| | ||||| ||||||| | |||||| |||||  || ||||||||||||    
T  40934542 ttgatggaaaattttatagggactaaaaagtgtgattttattttat-agggactaaaaataaaattctgaatatttacagggaccat-ttacttaattaa 40934445  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 40081845 - 40081947
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| |||||||||||  || ||||||||||| | ||||| | ||||| ||||||| | ||||||||||||  || |||||||||||||    
T  40081845 tgatggaaaattttatagggactaaaaaatgtgattttattttgt-agggactaaaaataaaattctgaatatttatagggaccat-ttacttaattaac 40081942  T
Q  144 cctat 148  Q
    |||||    
T  40081943 cctat 40081947  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 8238734 - 8238685
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagg 92  Q
    ||||| |||||||||| ||||||||||| ||| |||||||||||||||||    
T  8238734 ttgatggaaaattttatagggactaaaaagtgtgattttattttataagg 8238685  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 41506505 - 41506600
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    ||||||||||  | |||||||| ||| ||||||||||||| ||||| | ||||  ||||||| | ||||||||||||| || ||||||||||||||||    
T  41506505 gaaaattttattgagactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaatatttatagggatcat-ttacttaattaaccct 41506600  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 29368931 - 29368836
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 147  Q
    |||||||||| || |||||||| |||||||||||||||   ||||| | ||||  ||||| | | |||||||||||| ||| |||||||||||||||||    
T  29368931 gaaaattttatagagactaaaaggtgcgattttattttg--agggactaaaaacaaaattttgaatatttatagggacaat-ttacttaattaacccta 29368836  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 25513550 - 25513645
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    |||||| | ||||||||||||| ||| |||||||||||||  |||| | ||||  ||||||| | ||||||||||||  || ||||||||||||||||    
T  25513550 gaaaatgtcacagggactaaaaagtgtgattttattttat-ggggactaaaaacaaaattctgaatatttatagggaccat-ttacttaattaaccct 25513645  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 37220349 - 37220456
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||||||||| ||| |||||| |||| | ||||| | ||||  ||||||  | ||||||||||||| | |  ||||||||||    
T  37220349 ttgatggaaaattttatagggactaaaaagtgtgattttcttttgt-agggattaaaaacaaaattcggaatatttatagggatta-aaaacttaattaa 37220446  T
Q  143 ccctataatt 152  Q
    ||||||||||    
T  37220447 ccctataatt 37220456  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 38444505 - 38444464
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttatt 84  Q
    ||||| |||||||||||||||||||||| ||| |||||||||    
T  38444505 ttgatggaaaattttacagggactaaaaagtgtgattttatt 38444464  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 47764610 - 47764659
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagg 92  Q
    ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  47764610 ttgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 47764659  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 3308611 - 3308679
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagg 123  Q
    ||||||| ||||||||||||||||||||||||| ||| ||| | ||||||||||||| | ||||||||||    
T  3308611 ttttacatggactaaaatgtgcgattttattttctaa-ggactaaaaatgaaattctgaatatttatagg 3308679  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 34578399 - 34578300
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||||||  || || ||||  ||||||| | |||||||||| |  || |||||||||||||    
T  34578399 tgatggaaaattttatagggactaaaaagtgtgattttattttata--gggattaaaaaaaaattctgaatatttataggaaccat-ttacttaattaac 34578303  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 10737796 - 10737894
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||  |||||||||||  || ||||||||||||| ||| ||| ||||  |||||||||  |||||||||||  || ||||||||||||    
T  10737796 ttgatggaaaattttgtagggactaaaaaatgtgattttattttat-aggaaataaaaacaaaattctaaaaatttatagggaccat-ttacttaattaa 10737893  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 28770673 - 28770625
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagg 92  Q
    |||| |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  28770673 tgatggaaaattttatagggactaaaaagtgtgattttattttgtaagg 28770625  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 36486767 - 36486807
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||||| ||||||||||||| ||| ||||||||||||||    
T  36486767 gaaaatttcacagggactaaaaagtgtgattttattttata 36486807  T

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Target: scaffold0223 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 28201 - 28126
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttataggga 125  Q
    |||||||||||||||||||||| |||| |||||||||| | ||||| | ||||| ||||| ||| ||||||||||||    
T  28201 gaaaattttacagggactaaaaagtgcaattttattttgt-agggactaaaaataaaattttaaatatttataggga 28126  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 38556245 - 38556347
Alignment:
Q  44 tgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaac 143  Q
    |||| |||||||||| ||||||||||| || |||||||||||| | ||||| | |||   ||||||| | |||||||||||| ||| |||||||||||||    
T  38556245 tgatggaaaattttatagggactaaaaagtacgattttattttgt-agggactaaaatcaaaattctgaatatttatagggacaat-ttacttaattaac 38556342  T
Q  144 cctat 148  Q
    |||||    
T  38556343 cctat 38556347  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 11723571 - 11723653
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattct-aattatttataggga 125  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||| | ||||  ||||||| || ||||||||||||    
T  11723571 ttgatggaaaattttacagggactaaaaagtgtgattttattttat-agggactaaaaacaaaattctgaaatatttataggga 11723653  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 39134560 - 39134521
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttattttata 89  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  39134560 aaaattttatagggactaaaatgtgtgattttattttata 39134521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 6334201 - 6334105
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaacccta 147  Q
    |||||| ||| ||||||||||| ||| ||||||||||| ||| ||| | ||||| ||||||| | |||||||| |||  || |||||||||||||||||    
T  6334201 gaaaatcttatagggactaaaaagtgtgattttattttgtaa-ggactaaaaataaaattctgaatatttataaggaccat-ttacttaattaacccta 6334105  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 43927758 - 43927826
Alignment:
Q  76 gattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccct 146  Q
    |||||||||||||| |||| | ||||| ||||||| | ||||||||||||| || ||||||||||||||||    
T  43927758 gattttattttata-gggactaaaaataaaattctgaatatttatagggatcat-ttacttaattaaccct 43927826  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 12262824 - 12262721
Alignment:
Q  54 ttttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaaccctataattg 153  Q
    ||||| ||||||||||| |||  |||||||||| || |||| | ||||  ||||||||| ||||||||||||  || ||||||||||||||||  ||||     
T  12262824 ttttatagggactaaaaagtgttattttattttgta-gggattaaaaacaaaattctaaatatttatagggaccat-ttacttaattaacccttaaatta 12262727  T
Q  154 atttat 159  Q
    ||||||    
T  12262726 atttat 12262721  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 8846919 - 8846959
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  8846919 gaaaatgttacagggactaaaaagtgtgattttattttata 8846959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 16101278 - 16101314
Alignment:
Q  50 aaaattttacagggactaaaatgtgcgattttatttt 86  Q
    ||||||||||||||||||||  |||||||||||||||    
T  16101278 aaaattttacagggactaaatagtgcgattttatttt 16101314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 25903573 - 25903671
Alignment:
Q  43 ttgattgaaaattttacagggactaaaatgtgcgattttattttataagggaatcaaaatgaaattctaattatttatagggataatattacttaattaa 142  Q
    ||||| |||||||||| ||||| |||||  || ||||||||||||| ||||| | ||||  ||||| ||| ||||||||||||  || ||||||||||||    
T  25903573 ttgatggaaaattttatagggattaaaaaatgtgattttattttat-agggactaaaaacaaaattttaaatatttatagggaccat-ttacttaattaa 25903670  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 22162 - 22202
Alignment:
Q  49 gaaaattttacagggactaaaatgtgcgattttattttata 89  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  22162 gaaaatgttacagggactaaaaagtgtgattttattttata 22202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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