View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_116 (Length: 240)

Name: NF9303_low_116
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_116
NF9303_low_116
[»] chr8 (3 HSPs)
chr8 (19-222)||(259620-259822)
chr8 (19-222)||(656099-656301)
chr8 (19-222)||(841834-842036)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 259822 - 259620
Alignment:
Q  19 aaatatgattgacattattttatcttttataacacatgaatgatacatataattatcttgaaagttgtgcaaaattgatgtaccaattttaaaatgcaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  259822 aaatatgattgacattattttatcttttataacacatgaatgatacatataattatcttgaaagttgtgcaaaattgatgtaccaattttaaaatgcaa- 259724  T
Q  119 aaagaaattatatattctataacaatcaatcacaaataaagttatatgtgcatcgcacgagtaagaacactggttcttttttcaatggaataagcagcaa 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  259723 aaagaaattatatattctataacaaacaatcacaaataaagttatatgtgcatcgcacgagtaagaacactggttcttttttcaacggaataagcagcaa 259624  T
Q  219 tagg 222  Q
    ||||    
T  259623 tagg 259620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 656099 - 656301
Alignment:
Q  19 aaatatgattgacattattttatcttttataacacatgaatgatacatataattatcttgaaagttgtgcaaaattgatgtaccaattttaaaatgcaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  656099 aaatatgattgacattattttatcttttataacacatgaatgatacatataattatcttgaaagttgtgcaaaattgatgtaccaattttaaaatgcaa- 656197  T
Q  119 aaagaaattatatattctataacaatcaatcacaaataaagttatatgtgcatcgcacgagtaagaacactggttcttttttcaatggaataagcagcaa 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  656198 aaagaaattatatattctataacaaacaatcacaaataaagttatatgtgcatcgcacgagtaagaacactggttcttttttcaacggaataagcagcaa 656297  T
Q  219 tagg 222  Q
    ||||    
T  656298 tagg 656301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 841834 - 842036
Alignment:
Q  19 aaatatgattgacattattttatcttttataacacatgaatgatacatataattatcttgaaagttgtgcaaaattgatgtaccaattttaaaatgcaac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  841834 aaatatgattgacattattttatcttttataacacatgaatgatacatataattatcttgaaagttgtgcaaaattgatgtaccaattttaaaatgcaa- 841932  T
Q  119 aaagaaattatatattctataacaatcaatcacaaataaagttatatgtgcatcgcacgagtaagaacactggttcttttttcaatggaataagcagcaa 218  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  841933 aaagaaattatatattctataacaaacaatcacaaataaagttatatgtgcatcgcacgagtaagaacactggttcttttttcaacggaataagcagcaa 842032  T
Q  219 tagg 222  Q
    ||||    
T  842033 tagg 842036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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