View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_117 (Length: 240)
Name: NF9303_low_117
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 39177994 - 39177819
Alignment:
| Q |
14 |
aaaggcgcagatctgacatacttctttgaacccttagagaaacacaaatccaaagcaagtgaggaagttcaaaggagagggcatgccactggatatgaga |
113 |
Q |
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| T |
39177994 |
aaaggcgcagatctgacatacttctttgaacccttagagaaacacaaatccaaagcaagtgaggaagttcaaaggagaggg-atgccactggatatgaga |
39177896 |
T |
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| Q |
114 |
aaggagaaaagagatctttacgtcgcatttgaggatctatttgccacctcaccgacggaagagcagaaaacaactat |
190 |
Q |
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| T |
39177895 |
aaggagaaaagagatctttacgtcgcatttgaggttctatttgccacctcactgacggaagagcagaaaacaactat |
39177819 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 39168256 - 39168178
Alignment:
| Q |
46 |
cttagagaaacacaaatccaaagcaa-gtgaggaagttcaaaggagagggcatgccactggatatgagaaaggagaaaa |
123 |
Q |
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| T |
39168256 |
cttagggaatcacaaatccaaagcaaagtgaagaagttcagaggagagggcatgtcactgcttatgagaaaagagaaaa |
39168178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 44691465 - 44691574
Alignment:
| Q |
38 |
tttgaacccttagagaaacacaaatccaaagcaagtgaggaagttcaaaggagagggcatgccactggatatgagaaaggagaaaagagatctttacgtc |
137 |
Q |
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| T |
44691465 |
tttgatccctcagggaatcacaaatccgaagcaagtgaggaagttcaaaggggagggtatgccattgcatacgagcacgaagaaaggagatctttacgtc |
44691564 |
T |
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| Q |
138 |
gcatttgagg |
147 |
Q |
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| T |
44691565 |
acttttgagg |
44691574 |
T |
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