View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_133 (Length: 219)

Name: NF9303_low_133
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_133
NF9303_low_133
[»] chr6 (30 HSPs)
chr6 (18-203)||(4461004-4461189)
chr6 (82-203)||(4469752-4469869)
chr6 (60-188)||(3171664-3171792)
chr6 (32-108)||(4469418-4469494)
chr6 (115-202)||(4480671-4480758)
chr6 (118-188)||(4504478-4504548)
chr6 (129-188)||(4492947-4493006)
chr6 (115-188)||(4490436-4490509)
chr6 (129-202)||(4505849-4505922)
chr6 (137-202)||(4560506-4560571)
chr6 (132-188)||(4601784-4601840)
chr6 (131-202)||(4267233-4267304)
chr6 (137-198)||(4563711-4563772)
chr6 (137-202)||(4574308-4574373)
chr6 (135-188)||(4617020-4617073)
chr6 (149-188)||(4568065-4568104)
chr6 (135-201)||(4392094-4392160)
chr6 (134-188)||(4515202-4515256)
chr6 (118-179)||(4516302-4516363)
chr6 (137-202)||(4557125-4557190)
chr6 (137-202)||(4570972-4571037)
chr6 (137-202)||(4585636-4585701)
chr6 (137-202)||(4606958-4607023)
chr6 (140-188)||(4622145-4622193)
chr6 (64-188)||(4457561-4457686)
chr6 (129-188)||(4625943-4626002)
chr6 (130-179)||(4256702-4256751)
chr6 (123-184)||(4299825-4299886)
chr6 (137-202)||(4579432-4579497)
chr6 (137-202)||(4592231-4592296)
[»] chr8 (3 HSPs)
chr8 (132-188)||(1674221-1674277)
chr8 (137-194)||(20863918-20863975)
chr8 (137-202)||(16686334-16686399)
[»] chr5 (2 HSPs)
chr5 (132-188)||(28000180-28000236)
chr5 (140-198)||(24103002-24103060)
[»] scaffold0477 (1 HSPs)
scaffold0477 (140-188)||(4767-4815)
[»] chr3 (1 HSPs)
chr3 (132-188)||(1281109-1281165)
[»] chr7 (1 HSPs)
chr7 (143-188)||(3086426-3086471)
[»] scaffold0288 (1 HSPs)
scaffold0288 (140-188)||(3800-3848)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 4461004 - 4461189
Alignment:
Q  18 gaaagagggcatagaaaaaatacaaggtttgtgattgcataaaattagaacttctaaactatgcattattttttcttatcaaataaatgatttctaaaag 117  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4461004 gaaagagtgcatagaaaaaatacaaggtttgtgattgcttaaaattagaacttctaaactatgcattattttttcttatcaaagaaatgatttctaaaag 4461103  T
Q  118 aaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtctg 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4461104 aaaagatcacattaatctaattttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctg 4461189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 4469752 - 4469869
Alignment:
Q  82 attattttttcttatcaaataaatgatttctaaaagaaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttctt 181  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| |||||   ||||| ||||||||||||||||||||| |||||||||||||||||    
T  4469752 attatttttgcttatcaaagaaatgatttctaaaagaaaagatcactttaat---atttt-tttaagcaagacatccttaatgactttgtccaagttctt 4469847  T
Q  182 gtatgaaacacctccaggtctg 203  Q
    ||||||||||||||||||||||    
T  4469848 gtatgaaacacctccaggtctg 4469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 188
Target Start/End: Original strand, 3171664 - 3171792
Alignment:
Q  60 aattagaacttctaaactatgcattattttttcttatcaaataaatgatttctaaaagaaaagatcacattaatctaattttgtttaagcaagacatcct 159  Q
    |||||||||||||||| |||||||||||| | |||   ||| |||| | | | | |||||||||||||||||||||||| ||||||||||||||| ||||    
T  3171664 aattagaacttctaaattatgcattatttgtgcttgcaaaagaaataaatccaataagaaaagatcacattaatctaatattgtttaagcaagacctcct 3171763  T
Q  160 taatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||| ||||||||| ||||||||    
T  3171764 taatcactttatccaagttcatgtatgaa 3171792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 4469418 - 4469494
Alignment:
Q  32 aaaaaatacaaggtttgtgattgcataaaattagaacttctaaactatgcattattttttcttatcaaataaatgat 108  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  4469418 aaaaaatacaaggtttgtgattgcataaaactagaacttctaaactatgcattatttttgcttatcaaagaaatgat 4469494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 4480671 - 4480758
Alignment:
Q  115 aagaaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||  ||| ||||||||    
T  4480671 aagaaaaaatcacattaatctaattttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtct 4480758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 4504548 - 4504478
Alignment:
Q  118 aaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||    
T  4504548 aaaagatcacattaatctaatattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaa 4504478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 4492947 - 4493006
Alignment:
Q  129 ttaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  4492947 ttaatctaattttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaa 4493006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 4490509 - 4490436
Alignment:
Q  115 aagaaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||| || ||||||||  | |||||||| |||||||||||||||||||||||||||| ||||||||    
T  4490509 aagaaaagatcatataaatctaatagtttttaagcatgacatccttaatcactttgtccaagttcatgtatgaa 4490436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 4505849 - 4505922
Alignment:
Q  129 ttaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||| || |||||  ||| ||||||||    
T  4505849 ttaatctaattttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtct 4505922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4560506 - 4560571
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||||||||| || |||||||||||||| ||||||||| ||||||||  ||||||||||||    
T  4560506 attttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtct 4560571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 4601784 - 4601840
Alignment:
Q  132 atctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||||||||||| || |||||||| |||||||||| |||||||||||||    
T  4601784 atctaattttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaa 4601840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 202
Target Start/End: Complemental strand, 4267304 - 4267233
Alignment:
Q  131 aatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    |||||| | ||||||||||| ||| |||||||| ||||||||||||||| ||||||||| ||| ||||||||    
T  4267304 aatctagtattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtct 4267233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 4563711 - 4563772
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccag 198  Q
    ||||||||||||||| || ||||| |||||||||||||||||| ||||||||  ||||||||    
T  4563711 attttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccag 4563772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4574308 - 4574373
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||||||||| || |||||||||||||| ||||||||  ||||||||  ||||||||||||    
T  4574308 attttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtct 4574373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 4617020 - 4617073
Alignment:
Q  135 taattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||    
T  4617020 taattttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaa 4617073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 4568065 - 4568104
Alignment:
Q  149 caagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  4568065 caagacatccttaatcactttgtccaagttcatgtatgaa 4568104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 4392160 - 4392094
Alignment:
Q  135 taattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtc 201  Q
    ||||| |||||||||||||| |||||||||| ||||||||||||| || |||||  ||| |||||||    
T  4392160 taattatgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtc 4392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 4515256 - 4515202
Alignment:
Q  134 ctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||  |||||||    
T  4515256 ctaattttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaa 4515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 4516302 - 4516363
Alignment:
Q  118 aaaagatcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 179  Q
    |||| ||||| ||||||||||||||||| ||||  || |||||||||||||| |||||||||    
T  4516302 aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttc 4516363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4557125 - 4557190
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||||||||| || |||||||||||||| ||||| ||| ||||||||  ||| ||||||||    
T  4557125 attttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtct 4557190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4570972 - 4571037
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||| ||||||||| || |||||||||||||| ||||||||| ||||||||  ||| ||||||||    
T  4570972 attttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtct 4571037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4585636 - 4585701
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||| ||||||||| || |||||||||||||| ||||||||  ||||||||  ||||||||||||    
T  4585636 attttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtct 4585701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 4607023 - 4606958
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||||||||| || | |||||||||||| ||||||||| ||||||||| ||| || |||||    
T  4607023 attttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtct 4606958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 4622145 - 4622193
Alignment:
Q  140 ttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    ||||||||||| ||| |||||||| |||||||||||||| |||||||||    
T  4622145 ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaa 4622193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 4457561 - 4457686
Alignment:
Q  64 agaacttctaaactatgcattattttttcttatcaaataaatgatttctaaaagaaaagatcacattaat--ctaattttgtttaagcaagacatcctta 161  Q
    ||||||||||||||||||||||||||  |||||  || |||| | ||| | | ||||||||||| |||||  ||||| ||  | ||||| ||| ||||||    
T  4457561 agaacttctaaactatgcattattttg-cttatataagaaattaattccatatgaaaagatcactttaatatctaatatttgtgaagcatgacttcctta 4457659  T
Q  162 atcactttgtccaagttcttgtatgaa 188  Q
     |||||||||||||||||  |||||||    
T  4457660 gtcactttgtccaagttcaagtatgaa 4457686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 4625943 - 4626002
Alignment:
Q  129 ttaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||||  ||| ||||||||    
T  4625943 ttaatctaatattgtttaagcaagacatcattaatcagtttatccatattcatgtatgaa 4626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 4256751 - 4256702
Alignment:
Q  130 taatctaattttgtttaagcaagacatccttaatcactttgtccaagttc 179  Q
    ||||||| | ||||||||||| ||| |||||||| |||||||||||||||    
T  4256751 taatctagtattgtttaagcatgacctccttaataactttgtccaagttc 4256702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 4299886 - 4299825
Alignment:
Q  123 atcacattaatctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgta 184  Q
    ||||| ||| |||||| |||||||||||  || |||||||| ||||||||||||||| ||||    
T  4299886 atcactttattctaatattgtttaagcagaacctccttaataactttgtccaagttcatgta 4299825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4579432 - 4579497
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||| || || || |||||||||||||| ||||||||| ||||||||   |||||||||||    
T  4579432 attttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtct 4579497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 4592231 - 4592296
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||| ||||||||| || ||||| |||| ||||||||||||| | ||||||  ||||||||||||    
T  4592231 attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtct 4592296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 1674221 - 1674277
Alignment:
Q  132 atctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  1674221 atctaattttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaa 1674277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 20863975 - 20863918
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacct 194  Q
    ||||||||||||||| || |||||||||||||||||||||||| | |||||| |||||    
T  20863975 attttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccacct 20863918  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 16686399 - 16686334
Alignment:
Q  137 attttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccaggtct 202  Q
    ||||||||||||||| || ||| |||||||||| ||||||||| ||||||||  ||| ||||||||    
T  16686399 attttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtct 16686334  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 28000236 - 28000180
Alignment:
Q  132 atctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||    
T  28000236 atctaattttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaa 28000180  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 24103002 - 24103060
Alignment:
Q  140 ttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaaacacctccag 198  Q
    ||||||||||| ||| |||||||| ||||||||||||||| ||||||||| ||| ||||    
T  24103002 ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccag 24103060  T

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Target: scaffold0477 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 4815 - 4767
Alignment:
Q  140 ttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  4815 ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaa 4767  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 1281109 - 1281165
Alignment:
Q  132 atctaattttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||||||||||| |  ||||||||||||||||| |||||| ||||||||    
T  1281109 atctaattttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaa 1281165  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 3086426 - 3086471
Alignment:
Q  143 tttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaa 3086471  T

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Target: scaffold0288 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 3848 - 3800
Alignment:
Q  140 ttgtttaagcaagacatccttaatcactttgtccaagttcttgtatgaa 188  Q
    |||||||||||| || |||||||| |||||||||| |||| ||||||||    
T  3848 ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaa 3800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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