View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_low_134 (Length: 219)
Name: NF9303_low_134
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_134 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 36749204 - 36749003
Alignment:
| Q |
1 |
atatgataatgtaggtatgcctccacgggtaagcttactacaaagtcggatgtttacagctacggtgtagttcttctcgaattgctaacaggacgtgtac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36749204 |
atatgataatgtaggtatgcctccacgggtaagcttactacaaagtcggatgtttacagctacggtgtagttcttctcgaattactaacaggacgtgtac |
36749105 |
T |
|
| Q |
101 |
cagttgatattaagcggcccactggagaacatgtcctcgtctcttgggtaagaaaacagtactttgaaactattcaagactagtttgtttaaaaccaaag |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36749104 |
cagttgatattaagcggcccaccggagaacatgtcctcgtctcttgggtaagaaaacagtactttgaaactattcaagactagtttgtttaaaaccaaag |
36749005 |
T |
|
| Q |
201 |
gg |
202 |
Q |
| |
|
|| |
|
|
| T |
36749004 |
gg |
36749003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University