View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_139 (Length: 211)
Name: NF9303_low_139
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_139 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 10506651 - 10506833
Alignment:
| Q |
14 |
caaaggaatccttttaatgcttgctggtannnnnnnnnnnnagtctctacatatggtggtcctatgtttcattccatgcaaacaaatttcacaccacact |
113 |
Q |
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| T |
10506651 |
caaaggaatccttttaatgcttgctggtaccccccagccccagtctcaacatatggtggtcctatgtttcattccatgcaaacaaatttcacacaaccct |
10506750 |
T |
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| Q |
114 |
caatccacccaccatttccaacacataaacctgattttacatatcttggtcctactttgaggagggaacatggacatgaatat |
196 |
Q |
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| T |
10506751 |
cgatccacccaccatttccaacacataaacctgattttacatatcttggtcctactttgaggagggaacatgcacatgaatat |
10506833 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 24405687 - 24405743
Alignment:
| Q |
115 |
aatccacccaccatttccaacacataaacctgattttacatatcttggtcctacttt |
171 |
Q |
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| T |
24405687 |
aatccatccaccatttcaaacccaaaaacccgattttacatatcttggtcctacttt |
24405743 |
T |
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