View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_14 (Length: 513)
Name: NF9303_low_14
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 259 - 509
Target Start/End: Complemental strand, 48274432 - 48274182
Alignment:
| Q |
259 |
gttcatggacctttcaggttaagtaaaagcatagaccttctctgatacaaggctactgcttccattcagcaattccggagccatccatggtagagttcct |
358 |
Q |
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| T |
48274432 |
gttcatggacctttcaggttaagtaaaagcatagaccttctctgatacaaggctactgcttccattcagcaattccggagccatccatggtagagttcct |
48274333 |
T |
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| Q |
359 |
ctcacacctccagagatcagtgtctgacattttactttggatagacccaagtcaccaacctgatatcaagagcaagcaaatatgtaaactgtaaacaaat |
458 |
Q |
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| T |
48274332 |
ctcacacctccagagatcagtgtctgacattttactttggatagacccaagtcaccaacctgatatcaagagcaagcaaatatgtaaactgtaaacaaat |
48274233 |
T |
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| Q |
459 |
tgttctgggatccatactgtaaacaaactgtaaacaaattactctgtgctc |
509 |
Q |
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| T |
48274232 |
tgttctgcgatctatactgtaaacaaactgtaaacaaattactctgtgctc |
48274182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 48274690 - 48274511
Alignment:
| Q |
1 |
ctaaattagccaatgttattcaatttaatggactaaattgtcgtttcatatattagaaagactaatttacttgacatttaccatgaattcaagaattcaa |
100 |
Q |
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| T |
48274690 |
ctaaattagccaatgttattcaatttaatggactaaattgtcgtttcatatattagaaagactaatttacttgacatttaccatgaattcaagaattcaa |
48274591 |
T |
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| Q |
101 |
ccatggattacctataatagcaccatagtgcaaatcagcgtatggctcttgtccagttaagagttcccacatcacaatac |
180 |
Q |
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| T |
48274590 |
ccatggattacctataatagcaccatagtgcaaatcagcgtatggctcttgtccagttaagagttcccacatcacaatac |
48274511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 293 - 426
Target Start/End: Complemental strand, 25245210 - 25245077
Alignment:
| Q |
293 |
accttctctgatacaaggctactgcttccattcagcaattccggagccatccatggtagagttcctctcacacctccagagatcagtgtctgacatttta |
392 |
Q |
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| T |
25245210 |
accttttctgaaacaaggctactactcccattcaggagttcaggtgccatccaaggtagggttcctctcacaccaccggatattagagtctggcatttta |
25245111 |
T |
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| Q |
393 |
ctttggatagacccaagtcaccaacctgatatca |
426 |
Q |
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| T |
25245110 |
ctttggacagacccaagtctccaacctggtatca |
25245077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 25245403 - 25245327
Alignment:
| Q |
104 |
tggattacctataatagcaccatagtgcaaatcagcgtatggctcttgtccagttaagagttcccacatcacaatac |
180 |
Q |
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|||||||||||| || || ||||||||||||||||| || ||||||| |||||| | ||||||||||| ||||||| |
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| T |
25245403 |
tggattacctatgatggccccatagtgcaaatcagcatacggctcttctccagtgagcagttcccacatgacaatac |
25245327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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