View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_143 (Length: 208)
Name: NF9303_low_143
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_143 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13009301 - 13009094
Alignment:
| Q |
1 |
tcttcttcgactcctccaaaatccgatcgtgcaatgacatcactggagacgcccatggaagctgccgtggaaccgaaaagttgatatgtaatcccctatc |
100 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
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| T |
13009301 |
tcttcttcgacttctccaaaatccgctcgtgcaatgacatcattggagacgcccatggaagctgccgtggaaccgaaaagttgagatgtaagcccctttc |
13009202 |
T |
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| Q |
101 |
ttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagccaatgcaagaccatttgtagcaacaagttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13009201 |
ttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagccaatgcaagaccatttgtagcaacaagttca |
13009102 |
T |
|
| Q |
201 |
ttactctt |
208 |
Q |
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|||||||| |
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| T |
13009101 |
ttactctt |
13009094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 12976902 - 12976695
Alignment:
| Q |
1 |
tcttcttcgactcctccaaaatccgatcgtgcaatgacatcactggagacgcccatggaagctgccgtggaaccgaaaagttgatatgtaatcccctatc |
100 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
12976902 |
tcttcttcgacttctccaaaatccgctcgtgcaatgacatcattggagccgcccattgaagctgccgtagaaccgaaaagtttagatgtaatcccctatc |
12976803 |
T |
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| Q |
101 |
ttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagccaatgcaagaccatttgtagcaacaagttca |
200 |
Q |
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| T |
12976802 |
ttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagtcaatgcaagaccatttgtagcaacaagttca |
12976703 |
T |
|
| Q |
201 |
ttactctt |
208 |
Q |
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|||||||| |
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| T |
12976702 |
ttactctt |
12976695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13031659 - 13031449
Alignment:
| Q |
1 |
tcttcttcgactcctccaaaatccgatcgtgcaatgacatcactggagacgcccatggaag---ctgccgtggaaccgaaaagttgatatgtaatcccct |
97 |
Q |
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|||||||||||||| ||| ||||| |||||||| |||||| |||| ||||||| |||| |||||||||||||||||| || |||| ||||||||| |
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| T |
13031659 |
tcttcttcgactccaacaacatccgcacgtgcaattgcatcaccggagccgcccattgaagaagctgccgtggaaccgaaaaatttatatttaatcccct |
13031560 |
T |
|
| Q |
98 |
atcttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagccaatgcaagaccatttgtagcaacaagt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13031559 |
atcttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagccaatgcaagaccatttgtagcaacaagt |
13031460 |
T |
|
| Q |
198 |
tcattactctt |
208 |
Q |
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||||||||||| |
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| T |
13031459 |
tcattactctt |
13031449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 13012859 - 13012652
Alignment:
| Q |
1 |
tcttcttcgactcctccaaaatccgatcgtgcaatgacatcactggagacgcccatggaagctgccgtggaaccgaaaagttgatatgtaatcccctatc |
100 |
Q |
| |
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|||||||||||| | |||| ||||| |||||||||| ||||| |||| ||||||| |||| ||||||||||||||||| || | || ||| ||||||| |
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| T |
13012859 |
tcttcttcgacttccccaacatccgcacgtgcaatgatatcaccggagccgcccattgaagttgccgtggaaccgaaaaatttagattcaattccctatc |
13012760 |
T |
|
| Q |
101 |
ttgacaaggaattgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagccaatgcaagaccatttgtagcaacaagttca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
13012759 |
ttgacaaggaaatgcagccacaagtgaccacattgtaaacaacaaaattgaactcattgtataaatagtcgatgcaagaccatttgtagcaacaagttca |
13012660 |
T |
|
| Q |
201 |
ttactctt |
208 |
Q |
| |
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|||||||| |
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|
| T |
13012659 |
ttactctt |
13012652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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