View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_145 (Length: 205)

Name: NF9303_low_145
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_145
NF9303_low_145
[»] chr4 (15 HSPs)
chr4 (1-190)||(2547250-2547439)
chr4 (2-97)||(2381637-2381732)
chr4 (39-97)||(2391265-2391323)
chr4 (1-106)||(5035328-5035433)
chr4 (50-106)||(2486062-2486118)
chr4 (44-99)||(2382745-2382800)
chr4 (42-97)||(2482527-2482582)
chr4 (44-107)||(2621399-2621462)
chr4 (37-107)||(2361199-2361269)
chr4 (50-99)||(2393837-2393887)
chr4 (44-106)||(2467294-2467356)
chr4 (42-107)||(2471803-2471868)
chr4 (61-106)||(2477352-2477397)
chr4 (1-106)||(2534019-2534124)
chr4 (41-73)||(12126647-12126679)
[»] chr7 (2 HSPs)
chr7 (40-108)||(10169040-10169108)
chr7 (40-108)||(10176565-10176633)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 2547250 - 2547439
Alignment:
Q  1 gcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547250 gcaatgaagaataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttg 2547349  T
Q  101 caggaatgatggtacggttggagagatagagtgatttgacgtttatagggagagtggagattagggtaagaagtgtgttaaggtcaatgt 190  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547350 caggaatgatggtactgttggagagatagagtgatttgacgtttatagggagagtggagattagggtaagaagtgtgttaaggtcaatgt 2547439  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 2381732 - 2381637
Alignment:
Q  2 caatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccat 97  Q
    ||||||| || ||||| |||||| ||||  | || ||||| |||||| | ||||| |||||||||||||||||||  ||||||||||| |||||||    
T  2381732 caatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccat 2381637  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 2391323 - 2391265
Alignment:
Q  39 ttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccat 97  Q
    |||||||||| | ||||| |||||||||||||||||||  ||||||||||| |||||||    
T  2391323 ttcggaacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccat 2391265  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 5035328 - 5035433
Alignment:
Q  1 gcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttg 100  Q
    ||||| ||||| | |||||||||| |||||||  | ||||   |||||  ||||||||| ||| |||||||||| || ||||||||||||||| |||||     
T  5035328 gcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaacttttcatcttctcggacaaagctcgcaactcatttt 5035427  T
Q  101 caggaa 106  Q
    ||||||    
T  5035428 caggaa 5035433  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 2486062 - 2486118
Alignment:
Q  50 tgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaa 106  Q
    ||||||| |||||||||||||||||||  |||||||||||||   ||||||||||||    
T  2486062 tgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaa 2486118  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 2382800 - 2382745
Alignment:
Q  44 aacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccattt 99  Q
    ||||||||| ||| ||||| |||||||||||||  |||||||||||||| ||||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccattt 2382745  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 2482527 - 2482582
Alignment:
Q  42 ggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccat 97  Q
    ||||||| ||||||| ||||||||||||||||||| ||| | ||||| ||||||||    
T  2482527 ggaacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 2621462 - 2621399
Alignment:
Q  44 aacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaat 107  Q
    ||||| ||||||| |||||||||||||| ||||  || |||||||||||||||| || ||||||    
T  2621462 aacaagtgagagatgtcaaatttttcatatttttggagaaagctcgcaacccatctgtaggaat 2621399  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 2361269 - 2361199
Alignment:
Q  37 atttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaat 107  Q
    |||| ||||||| ||||||| |||||||||||||| ||||  ||||||||||| | |||| ||| ||||||    
T  2361269 attttggaacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaat 2361199  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 2393887 - 2393837
Alignment:
Q  50 tgagagacgtcaaattttt-catcttttcagacaaagctcgcaacccattt 99  Q
    ||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  2393887 tgagagatgtcaaattttttcatcttttgggacaaagctcgcaacccattt 2393837  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 2467294 - 2467356
Alignment:
Q  44 aacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaa 106  Q
    ||||| |||| || |||||||||||||||| ||  || |||||||||||||||| ||||||||    
T  2467294 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaa 2467356  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 2471803 - 2471868
Alignment:
Q  42 ggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaat 107  Q
    ||||||| | ||||| ||||| || |||||||||||||||| ||||||||| |||| | |||||||    
T  2471803 ggaacaatttagagatgtcaatttcttcatcttttcagacagagctcgcaatccatcttcaggaat 2471868  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 2477352 - 2477397
Alignment:
Q  61 aaatttttcatcttttcagacaaagctcgcaacccatttgcaggaa 106  Q
    ||||||||||||||||  |||||||||| |||||||||| ||||||    
T  2477352 aaatttttcatcttttttgacaaagctctcaacccatttacaggaa 2477397  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2534019 - 2534124
Alignment:
Q  1 gcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttg 100  Q
    ||||| ||||| | |||||||||| ||||| || | ||||   ||||| ||||||| || |||||||||||||| |  ||||||||||| ||| |||||     
T  2534019 gcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcatcttcttggacaaagctcggaactcatttt 2534118  T
Q  101 caggaa 106  Q
    ||||||    
T  2534119 caggaa 2534124  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 12126647 - 12126679
Alignment:
Q  41 cggaacaaatgagagacgtcaaatttttcatct 73  Q
    |||||||||||||||| ||||||||||||||||    
T  12126647 cggaacaaatgagagaggtcaaatttttcatct 12126679  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 10169108 - 10169040
Alignment:
Q  40 tcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 108  Q
    ||||||||| ||||||| |||||| || | || |||| ||| ||| |||||||||||||||| ||||||    
T  10169108 tcggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatg 10169040  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 10176633 - 10176565
Alignment:
Q  40 tcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 108  Q
    ||||||||| ||||||| |||||| || | || |||| ||| ||| |||||||||||||||| ||||||    
T  10176633 tcggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatg 10176565  T

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