View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_19 (Length: 496)
Name: NF9303_low_19
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 157 - 352
Target Start/End: Complemental strand, 41921468 - 41921273
Alignment:
| Q |
157 |
cacttgaagtagtgaatttgttctagtatcgttattgcataaataaatacaataaacaagggaatataacataagaatataggaaagtgagaaacttaca |
256 |
Q |
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| T |
41921468 |
cacttgaagtagtgaatttgttctagtatcgttattgcataaataaatacaataaacaagggaatataacataagaatataggaaagtgagaaacttaca |
41921369 |
T |
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| Q |
257 |
ctgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcatttggatgaaatgcaactaaagattgtgaagcat |
352 |
Q |
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| T |
41921368 |
ctgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcatttggatgaaatgcaactaaagattgtgaagcat |
41921273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 350 - 483
Target Start/End: Complemental strand, 41921239 - 41921109
Alignment:
| Q |
350 |
catacattggcaggcatgatgatgatgattcttgactactgaggttaaatgttggaatatcctcaatatcttcttcatcgctctcaataccttcttcatc |
449 |
Q |
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| T |
41921239 |
catacattggcagacatgatga---tgattcttgactactgatgttaaatgttggaatatcctcaatatcttcttcatcactctcaatatcttcttcgtc |
41921143 |
T |
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| Q |
450 |
gctctcaatatcttcttcatcactctcataagta |
483 |
Q |
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| T |
41921142 |
actctcaatatcttcttcatcactctcataagta |
41921109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 41921565 - 41921480
Alignment:
| Q |
20 |
cttggcatataaagtagtaagtaatttctttaaatttgaaatatctatttgttgttaaaatgttttctcaaaaattaaacaaaact |
105 |
Q |
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| T |
41921565 |
cttggcatataaagtagcaagtaatttctttaaatttgaaatatctatttgttgttaaaatgttttctcaaaaattaaacaaaact |
41921480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 1695489 - 1695370
Alignment:
| Q |
223 |
taacataagaatataggaaagtgagaaacttacactgtgcgctcagttttcaagcgactagcatttttcatttttgataaatgactgtttgtagcatttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| || || |||||||||||| |
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| T |
1695489 |
taacataagaatataggaaagtgagaaacttacactaaacgctcagttttcaggcggctagcatttttcatttttgataaacgattgattgtagcatttg |
1695390 |
T |
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| Q |
323 |
gatgaaatgcaactaaagat |
342 |
Q |
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| T |
1695389 |
gatgtaatgcaactaaagat |
1695370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 1698877 - 1698822
Alignment:
| Q |
24 |
gcatataaagtagtaagtaatttctttaaatttgaaatatctatttgttgttaaaa |
79 |
Q |
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| T |
1698877 |
gcatatgaagtagtaagtaatttatttaaatttgaaatatctacatgttgttaaaa |
1698822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 1310001 - 1309963
Alignment:
| Q |
30 |
aaagtagtaagtaatttctttaaatttgaaatatctatt |
68 |
Q |
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| T |
1310001 |
aaagtagtaagtaacttctttaaatttgaaatatctatt |
1309963 |
T |
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