View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_2 (Length: 666)
Name: NF9303_low_2
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Complemental strand, 880482 - 879950
Alignment:
| Q |
17 |
agatgatgttgatattcctgaattggtaatggtgaaaccgtctcgtcctttttataatgcattcgagataatttcatcgttgtcacatggttttgatctt |
116 |
Q |
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| T |
880482 |
agatgatgttgatattcctgaattggtaatggtgaaaccgtctcgtcctttttataatgcattcgagataatttcatcgttgtcacatggttttgatctt |
880383 |
T |
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| Q |
117 |
aggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagttttcggcttcaacaatgttggagaaacttgaggtgatggcgaagaagt |
216 |
Q |
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| T |
880382 |
aggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagttttcggcttcaacaatgttggagaaacttgaggtgatggggaagaagt |
880283 |
T |
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| Q |
217 |
taaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaagggaggggagaaagggaaaggtcgcgatgacaatggaggtatttga |
316 |
Q |
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| T |
880282 |
taaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaagggaggggagaaagggaaaggtagcgatgacaatggaggtatttga |
880183 |
T |
|
| Q |
317 |
ggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattggagtatgttaagatgtgtgaggaacaattgagaccttcactcaaa |
416 |
Q |
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| T |
880182 |
ggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattggagtatgttaagatgtgtgaggaacaattgagaccttcactcaaa |
880083 |
T |
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| Q |
417 |
gatattgtttggagttggcaaggtgacaatcataatgataataatcttcaatagtaacaattagtatagtttgaaagttgtttgtctatgtagtcgacaa |
516 |
Q |
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| T |
880082 |
gatattgtttggagttggcaaggtgacaatcataatgataataatcctcaatagtaacaattagtatagtttgaaagttggttgtctatgtagtcgacaa |
879983 |
T |
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| Q |
517 |
ttcgataaatgtctgatcttaatcgaataattc |
549 |
Q |
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| T |
879982 |
ttcgataatcgtctgatcttaatcgaataattc |
879950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 552 - 658
Target Start/End: Complemental strand, 879973 - 879866
Alignment:
| Q |
552 |
cgtctgatcttaattgaataattcaaatttctaataannnnnnn-atatttgatgtatccaacttaaagtatgagctatcctatcattagtagttggtac |
650 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
879973 |
cgtctgatcttaatcgaataattcaaatttctaataattttttttatatttgatgtatccaagtacaagtatgagctatcctatcattagtagttggtac |
879874 |
T |
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| Q |
651 |
cctttgct |
658 |
Q |
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|||||||| |
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| T |
879873 |
cctttgct |
879866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 72 - 442
Target Start/End: Complemental strand, 45267918 - 45267548
Alignment:
| Q |
72 |
aatgcattcgagataatttcatcgttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagtttt |
171 |
Q |
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|||||||| |||||||||||||| || |||||||| |||||||| |||| ||| ||||||||||||||||| | ||| |||||||||||||| ||||| | |
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| T |
45267918 |
aatgcatttgagataatttcatctttatcacatggatttgatctaaggaatttgtttgagacgaggaagagatcgccttcgatgtttatatccaagttgt |
45267819 |
T |
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| Q |
172 |
cggcttcaacaatgttggagaaacttgaggtgatggcgaagaagttaaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaag |
271 |
Q |
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| T |
45267818 |
ctgcttctgcggtggtggggaagctggagaatgtggcgaagaagcttaatttgagggtaacggggaagaaggatttcatggtgagaatgcaggggacaac |
45267719 |
T |
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| Q |
272 |
ggaggggagaaagggaaaggtcgcgatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattg |
371 |
Q |
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| T |
45267718 |
agaggggaggaaggggaaattgggtatgacggtggaggtgtttgaggtcgcaccggaggtggcagtggtagagttttctaagtcagctggagacacactt |
45267619 |
T |
|
| Q |
372 |
gagtatgttaagatgtgtgaggaacaattgagaccttcactcaaagatattgtttggagttggcaaggtga |
442 |
Q |
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| T |
45267618 |
gagtatgtaaagttctgtgaagatgaagttagaccttctctcaaagacattgtgtggagctggcagggtga |
45267548 |
T |
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