View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_low_20 (Length: 468)
Name: NF9303_low_20
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 37600513 - 37600236
Alignment:
| Q |
1 |
aatcagggtgagaggttgattgaaacatcttgtaaaaaccacgttgtccattactcactccgttttcgcatgtaagcatatcttttagttgaatacactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37600513 |
aatcagggtgagaggttgattgaaacatcttgtaaaaactacattgtccattactcactccgttttcgcatgtaagcatatcttttagttgaatacactt |
37600414 |
T |
|
| Q |
101 |
ataaaaaagccttggttttatatgtttttgnnnnnnnngtctgatctaaactgagttcgtagactataccgtagactcatcaaacttattctcaccccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
37600413 |
ataaaaaagccttggttttatatgtttttgaaaaaaaagtctaatctaaattaagttcgtagactagaccgtagacccatcaaatttattctcaccccta |
37600314 |
T |
|
| Q |
201 |
gttacaagatgcaacaattgataatacattaattttatatttgactttgactttcttctctttctattatgctcttct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37600313 |
gttacaagatgcaacaattgataatacattaattttatatttgactttgactttcttctctttctattatgctcttct |
37600236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 269 - 452
Target Start/End: Complemental strand, 37600207 - 37600024
Alignment:
| Q |
269 |
atgctcttctataatgttgtgatatgtagttcatatacttgttttgaacaatttaggtgtactaagggtttgtatgagtgtttcagaggagtttatgtgt |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37600207 |
atgctcttctataatgttgtgatatgtagttcatatacttgttttgaacaatttaggcgtactaagggtttgtatgagtgtttcagtggagtttatgtgt |
37600108 |
T |
|
| Q |
369 |
cgtagcgttttgctagtgatatccttcgattgccattagaaaaaataattgtgcctcttctccattgtggttgtgttccttaat |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37600107 |
cgtagcgttttgctagtgatatccttcgattgccattagaaaaaataattgtgcctcttctccattgtggttgtgttccttaat |
37600024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University