View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_22 (Length: 457)
Name: NF9303_low_22
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 51186914 - 51186461
Alignment:
| Q |
1 |
gaggagtgaatcatgcaaccaagtgatccaagggaaattggctaagacactcaatagcaataaacaagccaatagaaaaagaagattcaatataattact |
100 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186914 |
gaggaatgaatcatgcaaccaagtgatctaagggaaattggctaagacactcaatagcaataaacaagccaatagaaaaagaagattcaatataattact |
51186815 |
T |
|
| Q |
101 |
aatagagtgtttggagtggcgttttatttatcaaacttgcggcaaggaatcacggtatcctaaaagctaagaaacaaagcttctggattttcatgaaagt |
200 |
Q |
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| T |
51186814 |
aatagtgtgtttggagtggcgttttatttatcaaacttgcggcaaggaatcacggtatcctaaaagctaagaaacaaagcttctggattttcatgaaagt |
51186715 |
T |
|
| Q |
201 |
agatgttttggatgtgg---------------cgccaaaccaaacagcctataattctcaaatattgctaatagtgttgttcgaggaaaagaaataaagt |
285 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51186714 |
agatgttttggacgtgggtttggcttttccaccgccaaaccaaacagcctataattctcaaatattgctaatagtgttgttcgaggaaaagaaataaagt |
51186615 |
T |
|
| Q |
286 |
gtcagagtttatattttaggttcgacaatcaattatcaaataactaaatttcagtcatttggagagaggaatagaaatatagcaagtttttgtataagag |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51186614 |
gtcagagtttatattttaggttcgacaatcaattatcaaataactaaatttcagtcatttggagagaggaatagaaatatagcaag-ttttgtataagag |
51186516 |
T |
|
| Q |
386 |
ataatgaaaccatatgaagtgcaagataattgaaagaaaatcaaaagacagtatt |
440 |
Q |
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| T |
51186515 |
ataatgaaaccatatgaagtgcaagataattgaaagaaaatcaaaagacagtatt |
51186461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 41739639 - 41739749
Alignment:
| Q |
107 |
gtgtttggagtggcgttttatttatcaaacttgcggcaaggaatcacggtatcctaaaagctaagaaacaaagcttctggattttcatgaaagtagatgt |
206 |
Q |
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|||||||||||| |||||||||||||| || |||||||||||||||| |||| |||||||||| || ||||||||||| ||||||| |||||||| ||| |
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| T |
41739639 |
gtgtttggagtgacgttttatttatcacacgtgcggcaaggaatcacagtattctaaaagctatgatacaaagcttctaaattttcacgaaagtagctgt |
41739738 |
T |
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| Q |
207 |
tttggatgtgg |
217 |
Q |
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|||||| |||| |
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| T |
41739739 |
tttggacgtgg |
41739749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 51180958 - 51180855
Alignment:
| Q |
297 |
tattttaggttcgacaatcaattatcaaataactaaatttcagtcatttggagagagga-atagaaatatagcaagtttttgtataagagataatgaaac |
395 |
Q |
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||||| ||||| || || ||| |||||||||| ||||||||| |||||||||||| | |||||||||| ||||| ||||||||||||||||||||||| |
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| T |
51180958 |
tatttcaggtttgataaccaactatcaaataattaaatttcaagcatttggagagaaaacatagaaatatggcaagattttgtataagagataatgaaac |
51180859 |
T |
|
| Q |
396 |
cata |
399 |
Q |
| |
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|||| |
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|
| T |
51180858 |
cata |
51180855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 12525226 - 12525140
Alignment:
| Q |
107 |
gtgtttggagtggcgttttatttatcaaacttgcggcaaggaatcacggtatcctaaaagctaagaaacaaagcttctggattttca |
193 |
Q |
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||||||||| ||||||||||||||||||| ||||| ||| ||| | ||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
12525226 |
gtgtttggaacggcgttttatttatcaaacgtgcggtaagaaattaaggtatcctaaaagttaagaaacaaagtttctgaattttca |
12525140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 11026749 - 11026825
Alignment:
| Q |
107 |
gtgtttggagtggcgttttatttatcaaacttgcggcaaggaatcacggtatcctaaaagctaagaaacaaagcttct |
184 |
Q |
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||||||||||||||| ||||||| ||||| ||||||||| ||||||| | || | ||||||| |||| ||||||||| |
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| T |
11026749 |
gtgtttggagtggcg-tttatttttcaaaactgcggcaagaaatcacgttgtcgtgaaagctaggaaagaaagcttct |
11026825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 7561248 - 7561342
Alignment:
| Q |
108 |
tgtttggagtggcgttttatttatcaaacttgcggcaaggaatcacggtatcctaaaagctaagaaacaaagcttctggattttcatgaaagtag |
202 |
Q |
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||||||||| ||| || ||||| | |||| |||||||||||||||||| | | ||||| ||| |||||||||||| | ||||||| |||||||| |
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| T |
7561248 |
tgtttggagaggcattgtattttttaaacatgcggcaaggaatcacggaaccgtaaaatctatgaaacaaagcttttctattttcacgaaagtag |
7561342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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