View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_23 (Length: 449)
Name: NF9303_low_23
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 3220144 - 3219712
Alignment:
| Q |
1 |
acatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3220144 |
acatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaatatt |
3220045 |
T |
|
| Q |
101 |
ttataggtagtcgatacaagaaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgaacggatataattttgttgcaga |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3220044 |
ttataggtagtcgatacaaggaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgcacggatataattttgttgcaga |
3219945 |
T |
|
| Q |
201 |
aagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgcagaaagagccattggaaagccgcaagtg |
300 |
Q |
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| T |
3219944 |
aagggccgctggaaagccgcaaggtgaggatggcagtctggaagttgtagaaagtccccctggaaaggttgcagaaagagccattggaaagccgcaagtg |
3219845 |
T |
|
| Q |
301 |
gggggaaatgatgatattgcaaaaagtttagaattttttacatgagctttactgcagcgctatctgaccactatcagtagtgctactctaaacttcaatg |
400 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219844 |
gggggaaatgatgatattgcaaaaagtttagaa--ttttacatgagctttactgcagcgctatctgaccactatcagtagtgctactctaaacttcaatg |
3219747 |
T |
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| Q |
401 |
caaaatggggtttcgtcgtgtcgcacccatgagcc |
435 |
Q |
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| T |
3219746 |
caaaatggggtttcgtcgtgtcgcacccatgagcc |
3219712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15985444 - 15985677
Alignment:
| Q |
1 |
acatcttacggtttttccagtacacacaagatataccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaatatt |
100 |
Q |
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|||||| | |||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||| ||| || ||||| ||||||||||||||| |
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| T |
15985444 |
acatctgatggtttttccagtacacacaagatagaccatgcaaagttgaaagtgggtcaaattggagaacctaaactccgatcatgaatcgatgaatatt |
15985543 |
T |
|
| Q |
101 |
ttataggtagtcgatacaagaaaaacaacatgaaaagggtgtcgctgcttaatatccttgactaaatagctctgatgaacggatataattttgttgcaga |
200 |
Q |
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|||||||||||| ||||||| ||||||||||| ||||| | ||||||| |||||| |||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
15985544 |
ttataggtagtccatacaaggaaaacaacatgcgaagggcgccgctgctcaatatctttgactaaatagctctgatgcacggatagcattttgttgtaga |
15985643 |
T |
|
| Q |
201 |
aagggccgctggaaagccgcaaggtgaggatggc |
234 |
Q |
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| T |
15985644 |
aagggctgctggaaagccacaaggtgaggatggc |
15985677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 15985932 - 15985969
Alignment:
| Q |
376 |
agtagtgctactctaaacttcaatgcaaaatggggttt |
413 |
Q |
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| T |
15985932 |
agtagcgctactctaaacttcaatgcaaaatggggttt |
15985969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 15985680 - 15985738
Alignment:
| Q |
259 |
cctggaaaggttgcagaaagagccattggaaagccgcaagtggggggaaatgatgatatt |
318 |
Q |
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||| |||||||||||||||| |||| |||||||||||||| |||||||| ||||||||| |
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| T |
15985680 |
ccttgaaaggttgcagaaagggccaatggaaagccgcaag-agggggaaacgatgatatt |
15985738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 23729232 - 23729106
Alignment:
| Q |
36 |
ccatgcaaagttgaaagtggataaaataggagaacccaaaatctgatcacgaatcgatgaatattttataggtagtcgatacaagaaaaacaacatgaaa |
135 |
Q |
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||||||||||| |||||||| | | | ||||||||| ||||||||||||||||| |||| || ||| |||||| | | ||||| ||||||||||||| |
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| T |
23729232 |
ccatgcaaagtggaaagtgggtgtagtgggagaaccctaaatctgatcacgaatcaatgagtactttgtaggtaacccacacaaggcaaacaacatgaaa |
23729133 |
T |
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| Q |
136 |
agggtgtcgctgcttaatatccttgac |
162 |
Q |
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|||| | |||||| ||| |||||||| |
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| T |
23729132 |
agggcattgctgctcaatttccttgac |
23729106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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