View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9303_low_26 (Length: 429)

Name: NF9303_low_26
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9303_low_26
NF9303_low_26
[»] chr1 (11 HSPs)
chr1 (17-419)||(4872372-4872756)
chr1 (288-344)||(6326689-6326745)
chr1 (288-345)||(14508749-14508806)
chr1 (289-333)||(12535423-12535467)
chr1 (288-344)||(28239162-28239218)
chr1 (289-344)||(12532934-12532989)
chr1 (288-331)||(28231589-28231632)
chr1 (288-333)||(28326411-28326456)
chr1 (192-244)||(677215-677263)
chr1 (289-355)||(12540654-12540720)
chr1 (288-333)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (288-345)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (288-345)||(9066378-9066435)
chr2 (288-329)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (287-339)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 4872372 - 4872756
Alignment:
Q  17 caattacatcttcctaaagggtggttttcggttgagctgtaaacttatcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872372 caattacatcttcctaaagggtggttttcggttgagctgtaaacttatcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatcc 4872471  T
Q  117 acttgttcagaaagatagagatggatcttaacagccttcacgaatatgttctacaggtacataatatgcaggctgtgcaaagatagacttgtacgtacat 216  Q
    |||||                  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4872472 acttg------------------gatcttaacagccttcacgaatatgttctacaggtacataatacgcaggctgtgcaaagatagacttgtacgtacat 4872553  T
Q  217 caagcctatgatttttattctgaaatgactgctaagaatatcagctttggttctactatatatcgtaatctatctaatctatggctattgcatcctcggt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872554 caagcctatgatttttattctgaaatgactgctaagaatatcagctgtggttctactatatatcgtaatctatctaatctatggctattgcatcctcggt 4872653  T
Q  317 caatttaaacaagcaatcgccttctttaggcaatttgggccagagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcct 416  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4872654 caatttaaacaagcaatcaccttctttaggcaatttgggccagagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctctgctt 4872753  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 344  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 345
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 345  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  289 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 333  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 344  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  289 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 344  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagca 331  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 333  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  192 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 244  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  289 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 355  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 333  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 345  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 345
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 345  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  288 atctaatctatggctattgcatcctcggtcaatttaaacaag 329  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  287 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 339  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

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