View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9303_low_28 (Length: 422)
Name: NF9303_low_28
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 40405478 - 40405089
Alignment:
| Q |
18 |
tgtggataaattaaatcatattatgtatctatatgtgtattttcttttgag--gggttcaaatttaatagataatgaaacttgaaatgtcaagttgatta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40405478 |
tgtggataaattaaatcatattatgtatctatatgtgtattttcttttgagaggggttcaaatttaatagataatgaaacttgaaatgtcaagttgatta |
40405379 |
T |
|
| Q |
116 |
tagtttatagcttttgataacaagatttatgatagaacaaatcgtatgcatttacagaacaacttttacaaccgtttgggaatgttttcaaannnnnnnc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || | |
|
|
| T |
40405378 |
tagtttatagcttttgataacaagatttatgatagaacaaattgtatgcatttacagaacaacttttacaattgtttgggaatgttttcgaatttttttc |
40405279 |
T |
|
| Q |
216 |
agtttttcaatattcatcgacatacagcgtcgatgaggttacgaaacaaaactttgacacatgcaacacaacaaaagtgttggcaaattatggaaatgga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40405278 |
agtttttcaatattcatcgacatacagcgtcgatgaggttacgaaacaaaactttgacacatgcaacacaacaaaagtgttggcaaattacggaaatgga |
40405179 |
T |
|
| Q |
316 |
aacacaacggtgccattgacaagagccggagacaggtattttgtatgtggaaacaaattgtattgccttggtgggatgaaacttcatgtt |
405 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40405178 |
aacacgacggtgccattgacaagagccggagacaggtattttgtatgtggaaacaaactgtattgccttggtgggatgaaacttcatgtt |
40405089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University