View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_3 (Length: 655)
Name: NF9303_low_3
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 229 - 637
Target Start/End: Complemental strand, 35027827 - 35027421
Alignment:
| Q |
229 |
attcttcttgtggataggtaaacaataattattgaaaactcgcacgcataagtggatgagacaaagtttgaaccctgattaccacgttcaatatctaaca |
328 |
Q |
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| T |
35027827 |
attcttcttgtggataggcaaacaataattattggaaactcgcacacataagtggatgagacaaagtttgaaccctgattaccacgttcgat--ctaaca |
35027730 |
T |
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| Q |
329 |
attttgacatttttattggtcgagttagaatttgtaaactccatttaaaagttttagattattaatatagaccaaagcattggcattgacattgcatatg |
428 |
Q |
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| T |
35027729 |
attttgacatttttatcggtcaagttaaaatttgtaaactccatttaaaagttttagattattaatatagacgaaagcattggcattgacattgcatatg |
35027630 |
T |
|
| Q |
429 |
cgatctattgtagagtgttaaattgttcaatatttattttttatgtagcatatagtgttacatcgtaatcatcagaaaatacacgtnnnnnnntcaatgg |
528 |
Q |
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| T |
35027629 |
cgatctattatagagtgttaaattgttcaatatttattttttatgtagtatatagtgttacatcgtaatcatcagaaaatacacgtaaaaaaatcaatgg |
35027530 |
T |
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| Q |
529 |
atggaatctctgacaatttcttgtgcaaaagatcatgctttgcagtttgcagaactttgttagggattagagaatctgtgaaattattcccttcccaaag |
628 |
Q |
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| T |
35027529 |
atggaatctctgacaatttcttgtgcaaaagatcatgctttgcagtttgcagaactttgtaagggattagataatctgtgaaattattcccttcccaaag |
35027430 |
T |
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| Q |
629 |
tgtaacttt |
637 |
Q |
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| T |
35027429 |
tgtaacttt |
35027421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 35028036 - 35027897
Alignment:
| Q |
19 |
catcaatattggtctgtcatagtccataaaagtgtaaacttttattttcttgttatcaatcaaaatatcacagttgaacataaattgtttagtcttgatc |
118 |
Q |
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||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||| |
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| T |
35028036 |
catcaatcttggtctgtgatagttcataaaagtgtaaacttttattttcatgttatcaatcaaaatatcacagttgaacatgaattgtctggtcttgatc |
35027937 |
T |
|
| Q |
119 |
aaactttcactaatattcgactatatggacatggattcct |
158 |
Q |
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| T |
35027936 |
aaactttcactaatattcgactatatagacatggattcct |
35027897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 39173019 - 39173055
Alignment:
| Q |
328 |
aattttgacatttttattggtcgagttagaatttgta |
364 |
Q |
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| T |
39173019 |
aattttgacatttttatcggtggagttagaatttgta |
39173055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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