View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_30 (Length: 421)
Name: NF9303_low_30
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 100 - 401
Target Start/End: Complemental strand, 1971755 - 1971451
Alignment:
| Q |
100 |
taaaaatctatggtttgggaatgaccgaccatgtttgttataaggttgatcaaaatttattctaagaataacatta---agggttactaatgaattattt |
196 |
Q |
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| T |
1971755 |
taaaaatctatggtttgggaatgaccgaccatgtttgttataaggttgatcaaaatttattctaagaataacattattaagggttactaatgaattattt |
1971656 |
T |
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| Q |
197 |
gaatgaattgcaatccaactttctattgaattatcaagaagaagtctgtggaagagttcaaaccagatccatacttagcaactctgctgaattgtgcatt |
296 |
Q |
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| T |
1971655 |
gaatgaattgcaatccaactttctattgaattatcaagaagaagtctgtggaagaattcaaaccagatccatacttagcaactctgctgaattgtgcatt |
1971556 |
T |
|
| Q |
297 |
ttgggtgttttatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcgagtttgtctatcttaccatc |
396 |
Q |
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| T |
1971555 |
ttgggtgttttatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcaagtttgtctatcttaccatc |
1971456 |
T |
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| Q |
397 |
ttttt |
401 |
Q |
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||||| |
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| T |
1971455 |
ttttt |
1971451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 181 - 397
Target Start/End: Complemental strand, 1685191 - 1684975
Alignment:
| Q |
181 |
tactaatgaattatttgaatgaattgcaatccaactttctattgaattatcaagaagaagtctgtggaagagttcaaaccagatccatacttagcaactc |
280 |
Q |
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| T |
1685191 |
tactaatgaattatttgaatgaattgcagcccaactttctataccattataaagaagaaggatgtggaggagttcaagtctcatccatacttagcaactc |
1685092 |
T |
|
| Q |
281 |
tgctgaattgtgcattttgggtgttttatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcgagtt |
380 |
Q |
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| T |
1685091 |
tgctgaattgtgcattttgggtattctatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcatgat |
1684992 |
T |
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| Q |
381 |
tgtctatcttaccatct |
397 |
Q |
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| T |
1684991 |
tgtctatcttaccatct |
1684975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 204 - 401
Target Start/End: Complemental strand, 1695495 - 1695298
Alignment:
| Q |
204 |
ttgcaatccaactttctattgaattatcaagaagaagtctgtggaagagttcaaaccagatccatacttagcaactctgctgaattgtgcattttgggtg |
303 |
Q |
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| T |
1695495 |
ttgcagtccaactttctataagattatcaagaagaaggatgtggaggagttcaagcctgatccatacttggcaacattgttgaattgtgcattttgggta |
1695396 |
T |
|
| Q |
304 |
ttttatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcgagtttgtctatcttaccatcttttt |
401 |
Q |
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| T |
1695395 |
ttctatggaatgccttttgtgcacccaaacagccttttggtagtcactatcaatggtgttggacttgtttttgaggttgtctatcttaccatcttttt |
1695298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 196 - 401
Target Start/End: Complemental strand, 1700948 - 1700743
Alignment:
| Q |
196 |
tgaatgaattgcaatccaactttctattgaattatcaagaagaagtctgtggaagagttcaaaccagatccatacttagcaactctgctgaattgtgcat |
295 |
Q |
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|||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | |
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| T |
1700948 |
tgaatgtattgcagtccaactttctatggaattataaagaagaagtctgtggaagagttcaaaccagatccatacttagcaacattgttgaattgtgctt |
1700849 |
T |
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| Q |
296 |
tttgggtgttttatggaatgccttttgtgcacccaaacagccttttggtcgtcaccatcaatggtgttggacttgttttcgagtttgtctatcttaccat |
395 |
Q |
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| T |
1700848 |
tttgggtgttttatggaatgccttttgtgcacccaaacagcactttagttctctctatcaatagtgttggaattctctttgaggttgtctatcttaccat |
1700749 |
T |
|
| Q |
396 |
cttttt |
401 |
Q |
| |
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|||||| |
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| T |
1700748 |
cttttt |
1700743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 1675759 - 1675654
Alignment:
| Q |
243 |
tgtggaagagttcaaaccagatccatacttagcaactctgctgaattgtgcattttgggtgttttatggaatgccttttgtgcacccaaacagccttttg |
342 |
Q |
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|||||| |||||||| | ||| ||||| |||||| | || ||||||||||||||||||| || ||||| ||||||||||||||||| |||| ||||| |
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| T |
1675759 |
tgtggaggagttcaagtctgatacatacatagcaattgtgttgaattgtgcattttgggtattccatggattgccttttgtgcacccagacagaattttg |
1675660 |
T |
|
| Q |
343 |
gtcgtc |
348 |
Q |
| |
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|||||| |
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| T |
1675659 |
gtcgtc |
1675654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 1695723 - 1695682
Alignment:
| Q |
181 |
tactaatgaattatttgaatgaattgcaatccaactttctat |
222 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |
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| T |
1695723 |
tactaatgaattatttgaatgaattgcagcccaactttctat |
1695682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 1971788 - 1971760
Alignment:
| Q |
16 |
gttttatgaattgcttctctcaaatattg |
44 |
Q |
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| T |
1971788 |
gttttatgaattgcttctctcaaatattg |
1971760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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