View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9303_low_31 (Length: 412)
Name: NF9303_low_31
Description: NF9303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9303_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 1857617 - 1857999
Alignment:
| Q |
16 |
atggagatatcagatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattac |
115 |
Q |
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| T |
1857617 |
atggagatatcggatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagttccatttcattac |
1857716 |
T |
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| Q |
116 |
tttaggagtttttgcatacaaatttcagtttata----attctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgannn |
211 |
Q |
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| T |
1857717 |
tttaggagtttttgcatacaaatttcagtttatatataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagtttttaatgattt |
1857816 |
T |
|
| Q |
212 |
nnnnaagtgtagagactgagatggaagtgttctttaataataagaaatcacttaccaaattttaccgtaaaaatcacaattaacacataaatgatcatta |
311 |
Q |
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| T |
1857817 |
ttttaagtgtagagactgagatggaagtgttctttaataataagaaatcactgaccaaattttaccgtaaaaatcacaattaacacataaatgatcatta |
1857916 |
T |
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| Q |
312 |
tcctgattcaatacacaacctcccgtacaagattgatcattgggtgatagcacacaccaccaaattaagttgtctctagtttg |
394 |
Q |
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| T |
1857917 |
ttctgattcaatacataacctcccgtacaagattgatcattgggtgatagcacacaccaccaaattaagttgtctctagtttg |
1857999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 1869205 - 1869408
Alignment:
| Q |
6 |
agcagcacagatggagatatcagatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagtt-c |
104 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
1869205 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttataagacaaaatgcagtaac |
1869304 |
T |
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| Q |
105 |
catttcattactttaggagtttttgcatacaaatttcagtttataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagttttta |
204 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1869305 |
catttcattattttaggagtttttgcatacaaatttcagtttataattctaatgtaatttgttttatataatgtgttgtgtgcatgtaatccagttttta |
1869404 |
T |
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| Q |
205 |
atga |
208 |
Q |
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|||| |
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| T |
1869405 |
atga |
1869408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 6 - 251
Target Start/End: Original strand, 1843596 - 1843828
Alignment:
| Q |
6 |
agcagcacagatggagatatcagatatgacagcttgaaagatcacgtactgataacattggatgatggcagatgattgttagaagacaaaatgcagt-tc |
104 |
Q |
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|||| |||| ||||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
1843596 |
agcatcacacatggagatatcggatatgacagcttgaaagaccatgtactgatagcattggatgatggcagatgattgttttaagacaaaatgcagtaac |
1843695 |
T |
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| Q |
105 |
catttcattactttaggagtttttgcatacaaatttcagtttataattctaatgtaatttgttttatatattgtgttgtgtgcatgtaatccagttttta |
204 |
Q |
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| T |
1843696 |
catttcattattttaggagtttttgcatacaaatttcagtttataattttaatttaatttat-------------ttgtgtgcatgtaatccagttttta |
1843782 |
T |
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| Q |
205 |
atgannnnnnnaagtgtagagactgagatggaagtgttctttaataa |
251 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1843783 |
atga-ttgtataagtgtagagactgagatggaagtgttctataataa |
1843828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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